DrC_00684
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00684 (854 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P31230|MCA1_MOUSE Multisynthetase complex auxiliary comp... 178 1e-44 sp|O54873|MCA1_CRIGR Multisynthetase complex auxiliary comp... 172 1e-42 sp|Q12904|MCA1_HUMAN Multisynthetase complex auxiliary comp... 166 6e-41 sp|Q20970|SYM_CAEEL Methionyl-tRNA synthetase (Methionine--... 160 5e-39 sp|Q91WQ3|SYYC_MOUSE Tyrosyl-tRNA synthetase, cytoplasmic (... 148 2e-35 sp|P54577|SYYC_HUMAN Tyrosyl-tRNA synthetase, cytoplasmic (... 148 2e-35 sp|Q29465|SYYC_BOVIN Tyrosyl-tRNA synthetase, cytoplasmic (... 147 5e-35 sp|Q9SVN5|SYM_ARATH Probable methionyl-tRNA synthetase (Met... 141 2e-33 sp|Q9ZTS1|SYM_ORYSA Probable methionyl-tRNA synthetase (Met... 115 2e-25 sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 (G4p1 pr... 100 9e-21
>sp|P31230|MCA1_MOUSE Multisynthetase complex auxiliary component p43 [Contains: Endothelial monocyte-activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] Length = 310 Score = 178 bits (452), Expect = 1e-44 Identities = 97/214 (45%), Positives = 133/214 (62%), Gaps = 3/214 (1%) Frame = +2 Query: 11 PVLKKCTKSEPVNEKKVDAVKVTPPV---IKAEKSVKPKEPATKDKSKEDGKAQPKSNEA 181 P+ CT SE V + A +P IKA + K KE K K++ + ++ Sbjct: 85 PLQTNCTASESVVQSPSVATTASPATKEQIKAGEEKKVKEKTEKKGEKKEKQQSAAASTD 144 Query: 182 SEVIDISRFNMRIGKIIEITKHAEADSLYVEQVDVGEAKPRQIISGLVKYCTESDLLGRM 361 S+ ID SR ++RIG I+ KH +ADSLYVE+VDVGEA PR ++SGLV + + RM Sbjct: 145 SKPIDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRM 204 Query: 362 AVFLINLKPAKMRGIMSEGMIMCASSPEQGVVEPLMVPEGVKPGDIVTVEGFNYKPDDIM 541 V L NLKPAKMRG++S+ M+MCASSPE+ VE L P G PGD +T + F +PD + Sbjct: 205 VVLLCNLKPAKMRGVLSQAMVMCASSPEK--VEILAPPNGSVPGDRITFDAFPGEPDKEL 262 Query: 542 NPKKKILETVKPDLKVDENGIATYRGARWQVNGQ 643 NPKKKI E ++PDL + +ATY+GA ++V G+ Sbjct: 263 NPKKKIWEQIQPDLHTNAECVATYKGAPFEVKGK 296
>sp|O54873|MCA1_CRIGR Multisynthetase complex auxiliary component p43 [Contains: Endothelial monocyte-activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] Length = 359 Score = 172 bits (435), Expect = 1e-42 Identities = 89/179 (49%), Positives = 122/179 (68%), Gaps = 1/179 (0%) Frame = +2 Query: 110 KPKEPATKDKSKEDGKAQPKSNEA-SEVIDISRFNMRIGKIIEITKHAEADSLYVEQVDV 286 K KE K K++ K Q + A S+ +D+SR ++RIG+I+ + KH +ADSLYVE+VDV Sbjct: 169 KVKEKTDKKGEKKEKKLQSAAPSADSKPVDVSRLDLRIGRIVTVKKHPDADSLYVEEVDV 228 Query: 287 GEAKPRQIISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMCASSPEQGVVEPL 466 GEA PR +ISGLV + + RM V L NLKPAKMRGI+S+ M+MCASSPE+ VE L Sbjct: 229 GEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPEK--VEIL 286 Query: 467 MVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYRGARWQVNGQ 643 P G PGD +T + F +PD +NPKKKI E ++PDL + +ATY+G+ ++V G+ Sbjct: 287 APPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFEVKGK 345
>sp|Q12904|MCA1_HUMAN Multisynthetase complex auxiliary component p43 [Contains: Endothelial monocyte-activating polypeptide II (EMAP-II) (Small inducible cytokine subfamily E member 1)] Length = 312 Score = 166 bits (421), Expect = 6e-41 Identities = 86/179 (48%), Positives = 119/179 (66%), Gaps = 1/179 (0%) Frame = +2 Query: 110 KPKEPATKDKSKEDGKAQPKSNEA-SEVIDISRFNMRIGKIIEITKHAEADSLYVEQVDV 286 K KE K K++ K Q + A S+ ID+SR ++RIG II KH +ADSLYVE+VDV Sbjct: 122 KAKEKIEKKGEKKEKKQQSIAGSADSKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDV 181 Query: 287 GEAKPRQIISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMCASSPEQGVVEPL 466 GE PR ++SGLV + + RM + L NLKPAKMRG++S+ M+MCASSPE+ +E L Sbjct: 182 GEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPEK--IEIL 239 Query: 467 MVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYRGARWQVNGQ 643 P G PGD +T + F +PD +NPKKKI E ++PDL ++ +ATY+G ++V G+ Sbjct: 240 APPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGK 298
>sp|Q20970|SYM_CAEEL Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) Length = 917 Score = 160 bits (404), Expect = 5e-39 Identities = 82/179 (45%), Positives = 115/179 (64%) Frame = +2 Query: 83 PVIKAEKSVKPKEPATKDKSKEDGKAQPKSNEASEVIDISRFNMRIGKIIEITKHAEADS 262 P +A + P EP K K ++ GK + + ID+ R +MR+G+II+ KH +AD+ Sbjct: 720 PKKEAPSTPAPSEPK-KAKEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADA 778 Query: 263 LYVEQVDVGEAKPRQIISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMCASSP 442 LYVEQ+DVGE+ PR ++SGLV++ + R+ V L NLKPAKMRG+ S M+MCASSP Sbjct: 779 LYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRLVVVLCNLKPAKMRGVESRAMVMCASSP 838 Query: 443 EQGVVEPLMVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYRG 619 ++ VE + VP KPG V + ++PD+ +NPKKKI ETV DLKV G A ++G Sbjct: 839 DK--VEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKG 895
>sp|Q91WQ3|SYYC_MOUSE Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) Length = 528 Score = 148 bits (373), Expect = 2e-35 Identities = 82/186 (44%), Positives = 120/186 (64%), Gaps = 4/186 (2%) Frame = +2 Query: 71 KVTPPVIKAEKSVKPKEPATKDKSKEDGKAQPKSNEASEVIDISRFNMRIGKIIEITKHA 250 K P +K S +P+ K K K K++E EVI SR ++R+GKI+ + KH Sbjct: 327 KFNTPALKKLASAAYPDPS---KQKPPAKGPAKNSEPEEVIP-SRLDIRVGKILSVEKHP 382 Query: 251 EADSLYVEQVDVGEAKPRQIISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMC 430 +ADSLYVE++DVGEA+PR ++SGLV++ + +L R+ V L NLKP KMRG+ S+GM++C Sbjct: 383 DADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLC 442 Query: 431 ASSPEQGV---VEPLMVPEGVKPGDIVTVEGFNY-KPDDIMNPKKKILETVKPDLKVDEN 598 AS +GV VEPL P G PG+ V V+G+ +PD+ + PKKK+ E ++ D K+ E Sbjct: 443 AS--VEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEE 500 Query: 599 GIATYR 616 IA ++ Sbjct: 501 CIAQWK 506
>sp|P54577|SYYC_HUMAN Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) Length = 528 Score = 148 bits (373), Expect = 2e-35 Identities = 86/205 (41%), Positives = 127/205 (61%), Gaps = 4/205 (1%) Frame = +2 Query: 71 KVTPPVIKAEKSVKPKEPATKDKSKEDGKAQPKSNEASEVIDISRFNMRIGKIIEITKHA 250 K P +K S +P+ K K K K++E EVI SR ++R+GKII + KH Sbjct: 327 KFNTPALKKLASAAYPDPS---KQKPMAKGPAKNSEPEEVIP-SRLDIRVGKIITVEKHP 382 Query: 251 EADSLYVEQVDVGEAKPRQIISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMC 430 +ADSLYVE++DVGEA+PR ++SGLV++ + +L R+ V L NLKP KMRG+ S+GM++C Sbjct: 383 DADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLC 442 Query: 431 ASSPEQGV---VEPLMVPEGVKPGDIVTVEGFNY-KPDDIMNPKKKILETVKPDLKVDEN 598 AS +G+ VEPL P G PG+ V V+G+ +PD+ + PKKK+ E ++ D K+ E Sbjct: 443 ASI--EGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEE 500 Query: 599 GIATYRGARWQVNGQAGAIISTKLK 673 IA ++ + + G+I LK Sbjct: 501 CIAQWKQTNFMT--KLGSISCKSLK 523
>sp|Q29465|SYYC_BOVIN Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) Length = 528 Score = 147 bits (370), Expect = 5e-35 Identities = 84/205 (40%), Positives = 127/205 (61%), Gaps = 4/205 (1%) Frame = +2 Query: 71 KVTPPVIKAEKSVKPKEPATKDKSKEDGKAQPKSNEASEVIDISRFNMRIGKIIEITKHA 250 K P +K S +P+ K K K K++E EVI SR ++R+GK+I + KH Sbjct: 327 KFNTPALKKLSSAAYPDPS---KQKPAVKGPAKNSEPEEVIP-SRLDIRVGKVISVDKHP 382 Query: 251 EADSLYVEQVDVGEAKPRQIISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMC 430 +ADSLYVE++DVGEA+PR ++SGLV++ + +L R+ V L NLKP KMRG+ S+GM++C Sbjct: 383 DADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLC 442 Query: 431 ASSPEQGV---VEPLMVPEGVKPGDIVTVEGFNY-KPDDIMNPKKKILETVKPDLKVDEN 598 AS +GV VEPL P G PG+ V V+G+ +PD+ + PKKK+ E ++ D K+ + Sbjct: 443 AS--VEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDE 500 Query: 599 GIATYRGARWQVNGQAGAIISTKLK 673 IA ++ + + G++ LK Sbjct: 501 YIAQWKQTNFMT--KMGSVSCKSLK 523
>sp|Q9SVN5|SYM_ARATH Probable methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) Length = 797 Score = 141 bits (356), Expect = 2e-33 Identities = 72/165 (43%), Positives = 107/165 (64%), Gaps = 1/165 (0%) Frame = +2 Query: 125 ATKDKSKEDGKAQPKSNEASE-VIDISRFNMRIGKIIEITKHAEADSLYVEQVDVGEAKP 301 A K K+ G +PK A++ I ++R ++R+GKI++ KH +AD+LYVE++DVG + Sbjct: 611 AKKQKASSKGGGKPKPQPAADREITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEI 670 Query: 302 RQIISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMCASSPEQGVVEPLMVPEG 481 R ++SGLVKY ++ RM L NLKPAKMR I+S+ M++ ASS + VE + P+ Sbjct: 671 RTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKT 730 Query: 482 VKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYR 616 G+ VT GF +PDD++NPKKK+ ET+ DL EN +A Y+ Sbjct: 731 ANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYK 775
>sp|Q9ZTS1|SYM_ORYSA Probable methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) Length = 804 Score = 115 bits (287), Expect = 2e-25 Identities = 59/162 (36%), Positives = 96/162 (59%) Frame = +2 Query: 131 KDKSKEDGKAQPKSNEASEVIDISRFNMRIGKIIEITKHAEADSLYVEQVDVGEAKPRQI 310 K++ K+ G ++ K+ E + +++ ++R+G I + KH +ADSLYVE++DVGE PR + Sbjct: 623 KEQKKQSGGSKSKNAEVD--VTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTV 680 Query: 311 ISGLVKYCTESDLLGRMAVFLINLKPAKMRGIMSEGMIMCASSPEQGVVEPLMVPEGVKP 490 +SGLVK+ ++ R L NLKP MRGI S M++ AS+ + VE + PE Sbjct: 681 VSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAV 740 Query: 491 GDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYR 616 G+ VT G++ +P+ +N K K E + DL + +A Y+ Sbjct: 741 GERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYK 782
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 (G4p1 protein) (P42) (ARC1 protein) Length = 376 Score = 99.8 bits (247), Expect = 9e-21 Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 3/197 (1%) Frame = +2 Query: 14 VLKKCTKSE-PVNEKKVDAVKVTPPVIKAEKSVKPKEPATKDKSKEDGKAQPKSNEASEV 190 V KK K + P + + +K KA+K+ K K+ + Q + N+A E Sbjct: 152 VSKKAKKQDHPRGKPDEETLKKLREEAKAKKAAK--------KAANAKQQQEQQNKAPEK 203 Query: 191 IDISRFNMRIGKIIEITKHAEADSLYVEQVDVGEAK-PRQIISGLVKYCTESDLLGRMAV 367 S + R+G I + KH +ADSLYV +DVG+ + PR + SGLVK+ + R V Sbjct: 204 PKPSAIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKHFPLDAMQERYVV 263 Query: 368 FLINLKPAKMRGIMSEGMIMCASSPEQGVVEPLMVPEGVKPGDIVTVEGF-NYKPDDIMN 544 + NLKP MRGI S M++C S+ ++ VE + P+ K GD V EGF + P +N Sbjct: 264 VVCNLKPVNMRGIKSTAMVLCGSNDDK--VEFVEPPKDSKAGDKVFFEGFGDEAPMKQLN 321 Query: 545 PKKKILETVKPDLKVDE 595 PKKKI E ++P ++ Sbjct: 322 PKKKIWEHLQPHFTTND 338
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,186,018
Number of Sequences: 369166
Number of extensions: 1506082
Number of successful extensions: 5714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5602
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
