Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_K08
(412 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31230|MCA1_MOUSE Multisynthetase complex auxiliary comp... 62 6e-10
sp|Q12904|MCA1_HUMAN Multisynthetase complex auxiliary comp... 61 1e-09
sp|O54873|MCA1_CRIGR Multisynthetase complex auxiliary comp... 60 1e-09
sp|Q20970|SYM_CAEEL Methionyl-tRNA synthetase (Methionine--... 54 2e-07
sp|Q9SVN5|SYM_ARATH Probable methionyl-tRNA synthetase (Met... 50 1e-06
sp|P54577|SYYC_HUMAN Tyrosyl-tRNA synthetase, cytoplasmic (... 48 9e-06
sp|Q91WQ3|SYYC_MOUSE Tyrosyl-tRNA synthetase, cytoplasmic (... 47 1e-05
sp|Q29465|SYYC_BOVIN Tyrosyl-tRNA synthetase, cytoplasmic (... 46 3e-05
sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 (G4p1 pr... 31 0.84
sp|Q922D8|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytopla... 30 2.4
>sp|P31230|MCA1_MOUSE Multisynthetase complex auxiliary component p43 [Contains:
Endothelial monocyte-activating polypeptide II (EMAP-II)
(Small inducible cytokine subfamily E member 1)]
Length = 310
Score = 61.6 bits (148), Expect = 6e-10
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYRGARWQV 192
VE L P G PGD +T + F +PD +NPKKKI E ++PDL + +ATY+GA ++V
Sbjct: 234 VEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFEV 293
Query: 193 NGQ 201
G+
Sbjct: 294 KGK 296
>sp|Q12904|MCA1_HUMAN Multisynthetase complex auxiliary component p43 [Contains:
Endothelial monocyte-activating polypeptide II (EMAP-II)
(Small inducible cytokine subfamily E member 1)]
Length = 312
Score = 60.8 bits (146), Expect = 1e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYRGARWQV 192
+E L P G PGD +T + F +PD +NPKKKI E ++PDL ++ +ATY+G ++V
Sbjct: 236 IEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEV 295
Query: 193 NGQ 201
G+
Sbjct: 296 KGK 298
>sp|O54873|MCA1_CRIGR Multisynthetase complex auxiliary component p43 [Contains:
Endothelial monocyte-activating polypeptide II (EMAP-II)
(Small inducible cytokine subfamily E member 1)]
Length = 359
Score = 60.5 bits (145), Expect = 1e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYRGARWQV 192
VE L P G PGD +T + F +PD +NPKKKI E ++PDL + +ATY+G+ ++V
Sbjct: 283 VEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFEV 342
Query: 193 NGQ 201
G+
Sbjct: 343 KGK 345
>sp|Q20970|SYM_CAEEL Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS)
Length = 917
Score = 53.5 bits (127), Expect = 2e-07
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYRG 177
VE + VP KPG V + ++PD+ +NPKKKI ETV DLKV G A ++G
Sbjct: 841 VEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKG 895
>sp|Q9SVN5|SYM_ARATH Probable methionyl-tRNA synthetase (Methionine--tRNA ligase)
(MetRS)
Length = 797
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPDLKVDENGIATYR 174
VE + P+ G+ VT GF +PDD++NPKKK+ ET+ DL EN +A Y+
Sbjct: 722 VELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYK 775
>sp|P54577|SYYC_HUMAN Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS)
Length = 528
Score = 47.8 bits (112), Expect = 9e-06
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNY-KPDDIMNPKKKILETVKPDLKVDENGIATYRGARWQ 189
VEPL P G PG+ V V+G+ +PD+ + PKKK+ E ++ D K+ E IA ++ +
Sbjct: 452 VEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFM 511
Query: 190 VNGQAGAIISTKLK 231
+ G+I LK
Sbjct: 512 T--KLGSISCKSLK 523
>sp|Q91WQ3|SYYC_MOUSE Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS)
Length = 528
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNY-KPDDIMNPKKKILETVKPDLKVDENGIATYR 174
VEPL P G PG+ V V+G+ +PD+ + PKKK+ E ++ D K+ E IA ++
Sbjct: 452 VEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWK 506
>sp|Q29465|SYYC_BOVIN Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS)
Length = 528
Score = 46.2 bits (108), Expect = 3e-05
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNY-KPDDIMNPKKKILETVKPDLKVDENGIATYRGARWQ 189
VEPL P G PG+ V V+G+ +PD+ + PKKK+ E ++ D K+ + IA ++ +
Sbjct: 452 VEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFM 511
Query: 190 VNGQAGAIISTKLK 231
+ G++ LK
Sbjct: 512 T--KMGSVSCKSLK 523
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 (G4p1 protein) (P42) (ARC1 protein)
Length = 376
Score = 31.2 bits (69), Expect = 0.84
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 VEPLMVPEGVKPGDIVTVEGFNYK-PDDIMNPKKKILETVKPDLKVDE 153
VEP P+ K GD V EGF + P +NPKKKI E ++P ++
Sbjct: 294 VEP---PKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTND 338
>sp|Q922D8|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF synthase)
[Includes: Methylenetetrahydrofolate dehydrogenase ;
Methenyltetrahydrofolate cyclohydrolase ;
Formyltetrahydrofolate synthetase ]
Length = 935
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 16 EPLMVP-EGVKPGDIVTVEGFNYKPDDIMNPKKKILETVKPD 138
+P MV E +KPG +V G NY PDD +K++ V D
Sbjct: 218 QPEMVKGEWIKPGAVVIDCGINYVPDDTKPNGRKVVGDVAYD 259
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,074,889
Number of Sequences: 369166
Number of extensions: 620420
Number of successful extensions: 2218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2215
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)