DrC_00683
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00683 (996 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P13715|LDH_THEAQ L-lactate dehydrogenase (L-LDH) 32 2.1 sp|P68500|CNTN5_MOUSE Contactin 5 precursor (Neural recogni... 32 2.1 sp|Q03490|MI43_MYCIT 27 kDa lipoprotein antigen precursor (... 32 2.8 sp|Q87AF5|MURE_XYLFT UDP-N-acetylmuramoylalanyl-D-glutamate... 32 2.8 sp|P12757|SKIL_HUMAN Ski-like protein (Ski-related protein)... 32 3.7 sp|Q5R431|SKIL_PONPY Ski-like protein (Ski-related protein) 32 3.7 sp|Q9PF85|MURE_XYLFA UDP-N-acetylmuramoylalanyl-D-glutamate... 31 4.8 sp|P15270|SP60_DICDI Spore coat protein SP60 precursor 31 6.2 sp|Q05002|R1AB_CVH22 Replicase polyprotein 1ab (pp1ab) (ORF... 31 6.2 sp|P87730|VGLH_GPCMV Glycoprotein H precursor 31 6.2
>sp|P13715|LDH_THEAQ L-lactate dehydrogenase (L-LDH) Length = 310 Score = 32.3 bits (72), Expect = 2.1 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = +2 Query: 530 VMEGYVSEAANIVLQRVLMSKGLPDYFDVVSFDADTNLCLASYKDLAATRIAIPATDSSQ 709 V++G E + L R L D F + Y+DL R+ I A +Q Sbjct: 20 VLQGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRSGWYEDLEGARVVIVAAGVAQ 79 Query: 710 PPAEVRCYGIERRLRCVTDV 769 P E R ++R + DV Sbjct: 80 RPGETRLQLLDRNAQVFADV 99
>sp|P68500|CNTN5_MOUSE Contactin 5 precursor (Neural recognition molecule NB-2) Length = 1098 Score = 32.3 bits (72), Expect = 2.1 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Frame = +2 Query: 239 KVKEGCY--KGD---KCIVVEARSEGVVEGVPCFTDVEAYLTASLQTIYQRLHEVVRLPQ 403 +VK G Y KGD IVV +EG P + + + +++ + E + PQ Sbjct: 847 EVKVGVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVWKHVKESLGRPQ 906 Query: 404 GGQLDRVTVTELDDSVEGYRVR 469 G ++ TE +DSVE R R Sbjct: 907 GFEISYWKDTEPEDSVETVRTR 928
>sp|Q03490|MI43_MYCIT 27 kDa lipoprotein antigen precursor (Mi43 antigen) Length = 262 Score = 32.0 bits (71), Expect = 2.8 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Frame = -1 Query: 888 NSSCSIRGGTVRAFICTGLPTCTRLIRCPSDRKYVCHVTGTS-----VTHRNRRSIP*QR 724 ++SC++ T A T L C S K T TS VT S P Sbjct: 2 SASCAVPRLTRFAVFAVAGATALSLSACGSSNKSSSTSTSTSTSTSTVTSAAPSSTPNAE 61 Query: 723 TSAGGCDESVAGIAILVAARSL*LAKHKFVSASKLTTSK*SGSP 592 G SVAG +I V A F SA+K+T + +G P Sbjct: 62 AKVSGLIASVAGNSIQVTKEDNATAAVNFTSATKITEAVPAGLP 105
>sp|Q87AF5|MURE_XYLFT UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 32.0 bits (71), Expect = 2.8 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = -3 Query: 796 QKIRVPRHRHVRHASQPSLDSIATHFCGRLRRV--CRGDRDSG-GSEILVARQAQICVRV 626 Q + V + H A L S+++H CGRL V C G+RD G S++ V ++ V + Sbjct: 345 QPVVVVDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVL 404 Query: 625 EADD 614 DD Sbjct: 405 VTDD 408
>sp|P12757|SKIL_HUMAN Ski-like protein (Ski-related protein) (Ski-related oncogene) Length = 684 Score = 31.6 bits (70), Expect = 3.7 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Frame = +2 Query: 752 RCVTDVPVTWHT-----YFLSDGHLISRVQVGSPVQMKARTVPPLMEHDEFLPAP---IL 907 R T VP T H + L+ HL S+ +G P AR M FLP P +L Sbjct: 71 RTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTVFLPLPSPQVL 130 Query: 908 PRPQL 922 P P L Sbjct: 131 PGPLL 135
>sp|Q5R431|SKIL_PONPY Ski-like protein (Ski-related protein) Length = 684 Score = 31.6 bits (70), Expect = 3.7 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%) Frame = +2 Query: 752 RCVTDVPVTWHT-----YFLSDGHLISRVQVGSPVQMKARTVPPLMEHDEFLPAP---IL 907 R T VP T H + L+ HL S+ +G P AR M FLP P +L Sbjct: 71 RTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTVFLPLPSPQVL 130 Query: 908 PRPQL 922 P P L Sbjct: 131 PGPLL 135
>sp|Q9PF85|MURE_XYLFA UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 31.2 bits (69), Expect = 4.8 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = -3 Query: 796 QKIRVPRHRHVRHASQPSLDSIATHFCGRLRRV--CRGDRDSG-GSEILVARQAQICVRV 626 Q + V + H A L S+++H CGRL V C G+RD G S++ V ++ V Sbjct: 345 QPVVVVDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVF 404 Query: 625 EADD 614 DD Sbjct: 405 VTDD 408
>sp|P15270|SP60_DICDI Spore coat protein SP60 precursor Length = 424 Score = 30.8 bits (68), Expect = 6.2 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = -3 Query: 643 QICVRVEADDVEIVRQPLGHEDALEHD 563 + CV+++ DD+ +R P GHE ++HD Sbjct: 136 ECCVKIKCDDICDLRCPKGHECKIKHD 162
>sp|Q05002|R1AB_CVH22 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like proteinase (3CL-PRO) (3CLp) (M-PRO) (p34); Unknown protein 1; p5; p23; p12; Growth factor-like peptide (GFL) (p16); RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase (Hel) (p66) (p66-HEL); Unknown protein 2; p41; Unknown protein 3] Length = 6758 Score = 30.8 bits (68), Expect = 6.2 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = +2 Query: 98 PIDVPTASPNALSFIEKIDTTD-IKYTFFEDDLMTFIDEDVEIGFYK----AKVKEGCYK 262 P ++P N L ++++D + + L +D D + F+K AK+ E CY Sbjct: 1033 PFEMPFEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQFFKMGRVAKMIERCYT 1092 Query: 263 GDKCI 277 ++CI Sbjct: 1093 AEQCI 1097
>sp|P87730|VGLH_GPCMV Glycoprotein H precursor Length = 722 Score = 30.8 bits (68), Expect = 6.2 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +2 Query: 215 VEIGFYKAKVKEGCYKGDKCIVVEARSEGVVEGVPCFTDVEAY 343 + FY+A Y+ KCI + + S+ +++GV F +E+Y Sbjct: 57 ISFNFYEASRTVRTYQVPKCIFMSSVSKTIMQGVDLFESLESY 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,175,540
Number of Sequences: 369166
Number of extensions: 1906813
Number of successful extensions: 6331
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6329
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10526866900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
