Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_J03
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13715|LDH_THEAQ L-lactate dehydrogenase (L-LDH) 32 1.7
sp|Q03490|MI43_MYCIT 27 kDa lipoprotein antigen precursor (... 32 2.2
sp|Q87AF5|MURE_XYLFT UDP-N-acetylmuramoylalanyl-D-glutamate... 32 2.2
sp|P12757|SKIL_HUMAN Ski-like protein (Ski-related protein)... 32 2.9
sp|Q5R431|SKIL_PONPY Ski-like protein (Ski-related protein) 32 2.9
sp|Q9PF85|MURE_XYLFA UDP-N-acetylmuramoylalanyl-D-glutamate... 31 3.7
sp|P15270|SP60_DICDI Spore coat protein SP60 precursor 31 4.9
>sp|P13715|LDH_THEAQ L-lactate dehydrogenase (L-LDH)
Length = 310
Score = 32.3 bits (72), Expect = 1.7
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +2
Query: 374 VMEGYVSEAANIVLQRVLMSKGLPDYFDVVSFDADTNLCLASYKDLAATRIAIPATDSSQ 553
V++G E + L R L D F + Y+DL R+ I A +Q
Sbjct: 20 VLQGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRSGWYEDLEGARVVIVAAGVAQ 79
Query: 554 PPAEVRCYGIERRLRCVTDV 613
P E R ++R + DV
Sbjct: 80 RPGETRLQLLDRNAQVFADV 99
>sp|Q03490|MI43_MYCIT 27 kDa lipoprotein antigen precursor (Mi43 antigen)
Length = 262
Score = 32.0 bits (71), Expect = 2.2
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Frame = -1
Query: 732 NSSCSIRGGTVRAFICTGLPTCTRLIRCPSDRKYVCHVTGTS-----VTHRNRRSIP*QR 568
++SC++ T A T L C S K T TS VT S P
Sbjct: 2 SASCAVPRLTRFAVFAVAGATALSLSACGSSNKSSSTSTSTSTSTSTVTSAAPSSTPNAE 61
Query: 567 TSAGGCDESVAGIAILVAARSL*LAKHKFVSASKLTTSK*SGSP 436
G SVAG +I V A F SA+K+T + +G P
Sbjct: 62 AKVSGLIASVAGNSIQVTKEDNATAAVNFTSATKITEAVPAGLP 105
>sp|Q87AF5|MURE_XYLFT UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
Length = 495
Score = 32.0 bits (71), Expect = 2.2
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 640 QKIRVPRHRHVRHASQPSLDSIATHFCGRLRRV--CRGDRDSG-GSEILVARQAQICVRV 470
Q + V + H A L S+++H CGRL V C G+RD G S++ V ++ V +
Sbjct: 345 QPVVVVDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVL 404
Query: 469 EADD 458
DD
Sbjct: 405 VTDD 408
>sp|P12757|SKIL_HUMAN Ski-like protein (Ski-related protein) (Ski-related oncogene)
Length = 684
Score = 31.6 bits (70), Expect = 2.9
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Frame = +2
Query: 596 RCVTDVPVTWHT-----YFLSDGHLISRVQVGSPVQMKARTVPPLMEHDEFLPAP---IL 751
R T VP T H + L+ HL S+ +G P AR M FLP P +L
Sbjct: 71 RTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTVFLPLPSPQVL 130
Query: 752 PRPQL 766
P P L
Sbjct: 131 PGPLL 135
>sp|Q5R431|SKIL_PONPY Ski-like protein (Ski-related protein)
Length = 684
Score = 31.6 bits (70), Expect = 2.9
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Frame = +2
Query: 596 RCVTDVPVTWHT-----YFLSDGHLISRVQVGSPVQMKARTVPPLMEHDEFLPAP---IL 751
R T VP T H + L+ HL S+ +G P AR M FLP P +L
Sbjct: 71 RTCTSVPETLHLNPSLKHTLAQFHLSSQSSLGGPAAFSARHSQESMSPTVFLPLPSPQVL 130
Query: 752 PRPQL 766
P P L
Sbjct: 131 PGPLL 135
>sp|Q9PF85|MURE_XYLFA UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
Length = 495
Score = 31.2 bits (69), Expect = 3.7
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -3
Query: 640 QKIRVPRHRHVRHASQPSLDSIATHFCGRLRRV--CRGDRDSG-GSEILVARQAQICVRV 470
Q + V + H A L S+++H CGRL V C G+RD G S++ V ++ V
Sbjct: 345 QPVVVVDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVF 404
Query: 469 EADD 458
DD
Sbjct: 405 VTDD 408
>sp|P15270|SP60_DICDI Spore coat protein SP60 precursor
Length = 424
Score = 30.8 bits (68), Expect = 4.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 487 QICVRVEADDVEIVRQPLGHEDALEHD 407
+ CV+++ DD+ +R P GHE ++HD
Sbjct: 136 ECCVKIKCDDICDLRCPKGHECKIKHD 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,009,108
Number of Sequences: 369166
Number of extensions: 1552157
Number of successful extensions: 5095
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5091
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)