Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_O15
(875 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13715|LDH_THEAQ L-lactate dehydrogenase (L-LDH) 32 1.8
sp|P68500|CNTN5_MOUSE Contactin 5 precursor (Neural recogni... 32 1.8
sp|Q87AF5|MURE_XYLFT UDP-N-acetylmuramoylalanyl-D-glutamate... 32 2.3
sp|Q9PF85|MURE_XYLFA UDP-N-acetylmuramoylalanyl-D-glutamate... 31 4.0
sp|P15270|SP60_DICDI Spore coat protein SP60 precursor 31 5.2
sp|Q05002|R1AB_CVH22 Replicase polyprotein 1ab (pp1ab) (ORF... 31 5.2
sp|P87730|VGLH_GPCMV Glycoprotein H precursor 31 5.2
sp|P97527|CNTN5_RAT Contactin 5 precursor (Neural recogniti... 30 6.7
>sp|P13715|LDH_THEAQ L-lactate dehydrogenase (L-LDH)
Length = 310
Score = 32.3 bits (72), Expect = 1.8
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +2
Query: 530 VMEGYVSEAANIVLQRVLMSKGLPDYFDVVSFDADTNLCLASYKDLAATRIAIPATDSSQ 709
V++G E + L R L D F + Y+DL R+ I A +Q
Sbjct: 20 VLQGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRSGWYEDLEGARVVIVAAGVAQ 79
Query: 710 PPAEVRCYGIERRLRCVTDV 769
P E R ++R + DV
Sbjct: 80 RPGETRLQLLDRNAQVFADV 99
>sp|P68500|CNTN5_MOUSE Contactin 5 precursor (Neural recognition molecule NB-2)
Length = 1098
Score = 32.3 bits (72), Expect = 1.8
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +2
Query: 239 KVKEGCY--KGD---KCIVVEARSEGVVEGVPCFTDVEAYLTASLQTIYQRLHEVVRLPQ 403
+VK G Y KGD IVV +EG P + + + +++ + E + PQ
Sbjct: 847 EVKVGVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVWKHVKESLGRPQ 906
Query: 404 GGQLDRVTVTELDDSVEGYRVR 469
G ++ TE +DSVE R R
Sbjct: 907 GFEISYWKDTEPEDSVETVRTR 928
>sp|Q87AF5|MURE_XYLFT UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
Length = 495
Score = 32.0 bits (71), Expect = 2.3
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -2
Query: 796 QKIRVPRHRHVRHASQPSLDSIATHFCGRLRRV--CRGDRDSG-GSEILVARQAQICVRV 626
Q + V + H A L S+++H CGRL V C G+RD G S++ V ++ V +
Sbjct: 345 QPVVVVDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVL 404
Query: 625 EADD 614
DD
Sbjct: 405 VTDD 408
>sp|Q9PF85|MURE_XYLFA UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
(UDP-N-acetylmuramyl-tripeptide synthetase)
(Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
Length = 495
Score = 31.2 bits (69), Expect = 4.0
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 796 QKIRVPRHRHVRHASQPSLDSIATHFCGRLRRV--CRGDRDSG-GSEILVARQAQICVRV 626
Q + V + H A L S+++H CGRL V C G+RD G S++ V ++ V
Sbjct: 345 QPVVVVDYAHTPDALGQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVF 404
Query: 625 EADD 614
DD
Sbjct: 405 VTDD 408
>sp|P15270|SP60_DICDI Spore coat protein SP60 precursor
Length = 424
Score = 30.8 bits (68), Expect = 5.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 643 QICVRVEADDVEIVRQPLGHEDALEHD 563
+ CV+++ DD+ +R P GHE ++HD
Sbjct: 136 ECCVKIKCDDICDLRCPKGHECKIKHD 162
>sp|Q05002|R1AB_CVH22 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9;
p87; p195 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2; 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p34); Unknown protein 1; p5;
p23; p12; Growth factor-like peptide (GFL) (p16);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p66) (p66-HEL); Unknown protein 2; p41; Unknown
protein 3]
Length = 6758
Score = 30.8 bits (68), Expect = 5.2
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +2
Query: 98 PIDVPTASPNALSFIEKIDTTD-IKYTFFEDDLMTFIDEDVEIGFYK----AKVKEGCYK 262
P ++P N L ++++D + + L +D D + F+K AK+ E CY
Sbjct: 1033 PFEMPFEELNGLKILKQLDNNCWVNSVMLQIQLTGILDGDYAMQFFKMGRVAKMIERCYT 1092
Query: 263 GDKCI 277
++CI
Sbjct: 1093 AEQCI 1097
>sp|P87730|VGLH_GPCMV Glycoprotein H precursor
Length = 722
Score = 30.8 bits (68), Expect = 5.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 215 VEIGFYKAKVKEGCYKGDKCIVVEARSEGVVEGVPCFTDVEAY 343
+ FY+A Y+ KCI + + S+ +++GV F +E+Y
Sbjct: 57 ISFNFYEASRTVRTYQVPKCIFMSSVSKTIMQGVDLFESLESY 99
>sp|P97527|CNTN5_RAT Contactin 5 precursor (Neural recognition molecule NB-2)
Length = 1099
Score = 30.4 bits (67), Expect = 6.7
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 239 KVKEGCY--KGD---KCIVVEARSEGVVEGVPCFTDVEAYLTASLQTIYQRLHEVVRLPQ 403
+VK G Y KGD IVV +EG P + + + +++ + E + PQ
Sbjct: 848 EVKVGVYNNKGDGPFSQIVVICSAEGEPTAAPTDVTATSVSVSEIFVVWKHVKESLGRPQ 907
Query: 404 GGQLDRVTVTELDDSVEGYRVR 469
G ++ TE +DS E R R
Sbjct: 908 GFEIGYWKDTEPEDSAETVRTR 929
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,016,943
Number of Sequences: 369166
Number of extensions: 1607203
Number of successful extensions: 5536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5534
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)