Planaria EST Database

DrC_00681

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00681
         (964 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10348|YDA6_SCHPO  Putative endonuclease C1F12.06c             102   1e-21
sp|O66824|NFI_AQUAE  Endonuclease V (Deoxyinosine 3'endonucl...    79   1e-14
sp|Q6HGE0|NFI_BACHK  Endonuclease V (Deoxyinosine 3'endonucl...    78   3e-14
sp|P52887|ALG8_CAEEL  Probable dolichyl pyrophosphate Glc1Ma...    75   3e-13
sp|Q8YPV5|NFI_ANASP  Endonuclease V (Deoxyinosine 3'endonucl...    75   4e-13
sp|P96724|NFI_BACSU  Endonuclease V (Deoxyinosine 3'endonucl...    74   5e-13
sp|Q6MDK2|NFI_PARUW  Endonuclease V (Deoxyinosine 3'endonucl...    74   6e-13
sp|Q97M37|NFI_CLOAB  Endonuclease V (Deoxyinosine 3'endonucl...    69   2e-11
sp|Q60CT7|NFI_METCA  Endonuclease V (Deoxyinosine 3'endonucl...    68   3e-11
sp|O30108|NFI_ARCFU  Endonuclease V (Deoxyinosine 3'endonucl...    68   3e-11

>sp|Q10348|YDA6_SCHPO Putative endonuclease C1F12.06c
          Length = 252

 Score =  102 bits (255), Expect = 1e-21
 Identities = 96/292 (32%), Positives = 143/292 (48%), Gaps = 16/292 (5%)
 Frame = +3

Query: 57  IRNMNNPDKSIIEIWKTKQLYLKELLILDNVESWQEELNHKIDEMNDLIIPSNLKLIGGI 236
           + N N  DK  + IW+ +Q+ LK +L          +L  K   +N++      + + G+
Sbjct: 1   MNNDNLHDK--LTIWRQQQIELKGML----------QLIPKFQSLNEI------RYVVGL 42

Query: 237 DISFDKSNNNLACVCFGVIDSCTKKLVRK-HEKIVSIIEPYIVNYLAFRECEHMVGTIKE 413
           DISFDKS+   A     + D   + ++ K +  I  + E Y+  +L+FRE       IK 
Sbjct: 43  DISFDKSSPK-AVSALVIYDLEQRMIIYKDYLCIEKLEEDYVPGFLSFRE-------IKW 94

Query: 414 FLVLYPEMKPQ----VILVDGNGVYHTMGFGSACQLGVRLEQEGIDIPTVGVAKNYLQLH 581
           +L L   +  Q    +ILVDGNGV H +GFG AC LGV L     ++P VGVAKNYL   
Sbjct: 95  YLPLLNHIPHQFRIDIILVDGNGVLHPVGFGLACHLGVLL-----NLPVVGVAKNYLHCV 149

Query: 582 GMPS-----REELK----EKITDHMIDGSEILLDLFLDEESNAICTVRRCDKSNRSKDVN 734
           G+       RE LK    +K TDH I    I       ++S+ I        SN  + V 
Sbjct: 150 GLTESLDAHRETLKKHVLKKTTDHPILIHSI-------DQSSEILGAAVWTSSNSKRPV- 201

Query: 735 KLGKLAFISAGHRITLKTAVNIVRICSK--CRMPEPILLADHLAKNFLEKRK 884
                 ++S G+++ L+ ++ +V+ CS    R+PEPI  AD  AK  L + K
Sbjct: 202 ------YVSIGNQMNLEQSIQLVQKCSSSHSRVPEPIRQADIYAKFVLSQSK 247

>sp|O66824|NFI_AQUAE Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 220

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 4/245 (1%)
 Frame = +3

Query: 135 ILDNVESWQEELNHKIDEMNDLIIPSNLKLIGGIDISFDKSNNN--LACVCFGVIDSCTK 308
           +L+ ++  Q E   K+   +D      ++ IGG+D++F+K N N   A     V++  T 
Sbjct: 3   LLEKLKKIQLECAKKVIARDDF---EKVETIGGMDLTFEKINENPTRAWASLVVVELKTL 59

Query: 309 KLVRKHEKIVSIIEPYIVNYLAFRECEHMVGTIKEFLVLYP--EMKPQVILVDGNGVYHT 482
           K V +H     +  PYI  +LAFRE   +       L LY   ++KP V  +DG G+ H 
Sbjct: 60  KPVYQHVVKDIVDFPYIPTFLAFREMPLL-------LKLYETAKVKPDVYFIDGQGIAHP 112

Query: 483 MGFGSACQLGVRLEQEGIDIPTVGVAKNYLQLHGMPSREELKEKITDHMIDGSEILLDLF 662
            G G A   GV   +      TVGVAK+  +L G  ++E   ++       GS      +
Sbjct: 113 RGCGIASHFGVETGE-----VTVGVAKS--KLFGY-AKEPAPQR-------GSY----TY 153

Query: 663 LDEESNAICTVRRCDKSNRSKDVNKLGKLAFISAGHRITLKTAVNIVRICSKCRMPEPIL 842
           L  +   I  V R  K N +          ++S GHRI+LKTA+++V   SK R+PEP  
Sbjct: 154 LKYKGKIIGAVVR-TKDNTAP--------VYVSVGHRISLKTAIDLVLKTSKYRVPEPTR 204

Query: 843 LADHL 857
           LA +L
Sbjct: 205 LAHNL 209

>sp|Q6HGE0|NFI_BACHK Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 235

 Score = 78.2 bits (191), Expect = 3e-14
 Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 5/247 (2%)
 Frame = +3

Query: 126 ELLILDNVESWQEELNHKIDEMNDLIIPSNLKLIGGIDISFDKSNNN-LACVCFGVIDSC 302
           E  ++      Q EL+ +I   N+  I   ++ I G+D+++   N       C  +ID  
Sbjct: 9   EKKLIQEFSKIQSELSPRIKLENNFQI-EEIQFIAGVDLAYWNVNKTKYGTCCIVIIDYG 67

Query: 303 TKKLVRKHEKIVSIIEPYIVNYLAFRECEHMVGTIKEFLVLYPEMKPQVILVDGNGVYHT 482
           TK++V K      I  PYI  +LAFRE   ++  +K+        +P +   DGNG  H 
Sbjct: 68  TKEVVEKVYSYGEIPIPYIPGFLAFRELPLIIEAVKKL-----TKQPDIYFFDGNGYLHY 122

Query: 483 MGFGSACQLGVRLEQEGIDIPTVGVAKNYLQLHGMP--SREELKEKITDHMIDGSEILLD 656
              G A      L +     PT+GVAK+YL++  +     E LK   TD +I+       
Sbjct: 123 RHMGIATHASFLLNK-----PTIGVAKSYLKIRDVDFIMPENLKGSYTDIVINN------ 171

Query: 657 LFLDEESNAICTVRRCDKSNRSKDVNKLGKLAFISAGHRITLKTAVNIVRIC--SKCRMP 830
                           +   R+    K  K  F+S G+ I L T+  IV  C  ++ R+P
Sbjct: 172 ----------------EVYGRTLRTTKNVKPIFVSCGNWIDLDTSTEIVMNCINNESRLP 215

Query: 831 EPILLAD 851
            P+ LAD
Sbjct: 216 IPVRLAD 222

>sp|P52887|ALG8_CAEEL Probable dolichyl pyrophosphate Glc1Man9GlcNAc2
           alpha-1,3-glucosyltransferase
           (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
           glucosyltransferase)
          Length = 758

 Score = 75.1 bits (183), Expect = 3e-13
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 1/166 (0%)
 Frame = +3

Query: 87  IIEIWKTKQL-YLKELLILDNVESWQEELNHKIDEMNDLIIPSNLKLIGGIDISFDKSNN 263
           I EIW  K    ++E LI D+  S Q      +++++D+      KL+ GID S  K N+
Sbjct: 501 IFEIWWAKATCQIRERLIRDSTYSVQA-----VEDLDDV------KLVAGIDTSAAKLNS 549

Query: 264 NLACVCFGVIDSCTKKLVRKHEKIVSIIEPYIVNYLAFRECEHMVGTIKEFLVLYPEMKP 443
           ++  +          K V        +  PYI  YLA RE E M   +K  +   PE++P
Sbjct: 550 DMVYISVSFWTYPDLKHVATISDTRMLELPYIPQYLAVREAEVMADFLKSVITERPELRP 609

Query: 444 QVILVDGNGVYHTMGFGSACQLGVRLEQEGIDIPTVGVAKNYLQLH 581
            VIL DG G +H+ G G AC +G         I ++GVAKN L LH
Sbjct: 610 DVILCDGFGEFHSRGCGMACHVGAL-----SGIASIGVAKN-LTLH 649

>sp|Q8YPV5|NFI_ANASP Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 221

 Score = 74.7 bits (182), Expect = 4e-13
 Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 4/249 (1%)
 Frame = +3

Query: 132 LILDNVESWQEELNHKIDEMNDLIIPSNLKLIGGIDISFDKSNNNLACVCFGVIDSCTKK 311
           L ++   + QEEL H++   +    P  ++ + G+D+ F+ ++  ++     V+     +
Sbjct: 11  LTVEEAITIQEELRHQVITEDQFTQP--VQYVAGVDMGFE-ADGTISRAAVAVLSFPDLQ 67

Query: 312 LVRKHEKIVSIIEPYIVNYLAFRECEHMVGTIKEFLVLYPEMKPQVILVDGNGVYHTMGF 491
           ++  +        PYI  +L+FRE   ++  + +      + KP +IL DG G+ H    
Sbjct: 68  VIETNLAYRPTSFPYIPGFLSFREIPAVLDALAKV-----QTKPDIILCDGQGIAHPRRL 122

Query: 492 GSACQLGVRLEQEGIDIPTVGVAKNYLQLHGMPSREELKEK--ITDHMIDGSEILLDLFL 665
           G A  LGV L     +IPT+GVAK+ L    +   EEL +       +I   EI+     
Sbjct: 123 GIASHLGVLL-----NIPTIGVAKSLL----IGKHEELADTKGSWQPLIHRGEII----- 168

Query: 666 DEESNAICTVRRCDKSNRSKDVNKLG-KLAFISAGHRITLKTAVNIVRICS-KCRMPEPI 839
                A+   R             +G K  ++S+GH+I+L TA++ V  C+ K R+PE  
Sbjct: 169 ----GAVLRTR-------------VGVKPVYVSSGHKISLPTAIDYVLRCTPKYRLPETT 211

Query: 840 LLADHLAKN 866
            +AD LA N
Sbjct: 212 RVADKLASN 220

>sp|P96724|NFI_BACSU Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 238

 Score = 74.3 bits (181), Expect = 5e-13
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 6/246 (2%)
 Frame = +3

Query: 159 QEELNHKIDEMNDLIIPSNLKLIGGIDISF-DKSNNNLACVCFGVIDSCTKKLVRKHEKI 335
           Q  L ++I+ ++  I P ++    G+D+++ ++        C  VID+ TK+++ K   +
Sbjct: 21  QFNLKNRIN-LSPTIHPDSINTGAGVDLAYWEQDGEPYGVCCIIVIDADTKEVIEKVHSM 79

Query: 336 VSIIEPYIVNYLAFRECEHMVGTIKEFLVLYPEMKPQVILVDGNGVYHTMGFGSACQLGV 515
             I  PY+  +LAFRE   ++   K+      E +P V L DGNG  H    G A     
Sbjct: 80  GRISVPYVSGFLAFRELPLIIEAAKKL-----ETEPDVFLFDGNGYLHYNHMGVATHAAF 134

Query: 516 RLEQEGIDIPTVGVAKNYLQLHGMPSREELKEKITDHMIDGSEILLDLFLDEESNAICTV 695
            L +     PT+G+AK YL++ G        + +T  +  G+    D+ +D E       
Sbjct: 135 FLGK-----PTIGIAKTYLKIKGC-------DFVTPEIEVGA--YTDIIIDGEVYGRALR 180

Query: 696 RRCDKSNRSKDVNKLGKLAFISAGHRITLKTAVNIVR--ICSKCRMPEPILLAD---HLA 860
            R D            K  F+S G+ I L ++  I    I  + R+P P+ LAD   H+ 
Sbjct: 181 TRRDV-----------KPIFLSCGNYIDLDSSYQITMSLINQESRLPIPVRLADLETHVL 229

Query: 861 KNFLEK 878
           + F +K
Sbjct: 230 RTFYQK 235

>sp|Q6MDK2|NFI_PARUW Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 235

 Score = 73.9 bits (180), Expect = 6e-13
 Identities = 71/246 (28%), Positives = 110/246 (44%), Gaps = 2/246 (0%)
 Frame = +3

Query: 159 QEELNHKIDEMNDLIIPSNLKLIGGIDISFDKSNNNLACVCFGVIDSCTKKLVRKHEKIV 338
           Q+EL ++I   ++   P   +  GG+D+S +  +         ++       V+ H  + 
Sbjct: 24  QKELANRICLEDEFNTP---EFFGGMDVSNNLFDPKQIIYATAILLDSKMLSVQFHNSVS 80

Query: 339 SIIE-PYIVNYLAFRECEHMVGTIKEFLVLYPEMKPQVILVDGNGVYHTMGFGSACQLGV 515
                PYI  +L FRE   ++  ++    L     P +I VDG G+ H    G A  +GV
Sbjct: 81  QRQTFPYIPGFLGFREAPALIDALESLPKL-----PDMIFVDGQGISHPRRLGIASHIGV 135

Query: 516 RLEQEGIDIPTVGVAKNYLQLHGMPSREELKEKITDHMIDGSEILLDLFLDEESNAICTV 695
                 ++IPT+GVAKN L   G P +++L   + D+      + L  +  E    + T 
Sbjct: 136 L-----VNIPTIGVAKNIL--FGEP-KKDLGSCVGDY------VFLYAYGKEIGALVRTK 181

Query: 696 RRCDKSNRSKDVNKLGKLAFISAGHRITLKTAVNIVRICSK-CRMPEPILLADHLAKNFL 872
            RC             K   IS GHR++L+TA+  V  C K  R+PEP   A HLA N  
Sbjct: 182 LRC-------------KPLIISTGHRVSLRTAIEYVLNCVKGYRLPEPTRQA-HLAANAF 227

Query: 873 EKRKNA 890
            K+  A
Sbjct: 228 RKQSQA 233

>sp|Q97M37|NFI_CLOAB Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 234

 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 64/219 (29%), Positives = 101/219 (46%), Gaps = 6/219 (2%)
 Frame = +3

Query: 213 NLKLIGGIDISF-DKSNNNLACVCFGVIDSCTKKLVRKHEKIVSIIEPYIVNYLAFRECE 389
           ++KL  G+D+++  K        C  VID  T +++ K      I  PY+  +LAFRE  
Sbjct: 38  DIKLCAGVDLAYWTKGEKQYGVCCIIVIDYNTGEIIEKAYDYGEIEVPYMPGFLAFRELP 97

Query: 390 HMVGTIKEFLVLYPEMKPQVILVDGNGVYHTMGFGSACQLGVRLEQEGIDIPTVGVAKNY 569
            ++ T+K+      + +P + + DGNG  H    G A      L +     PT+GVAK+Y
Sbjct: 98  LVIKTVKKL-----KNEPDIFMFDGNGYLHYNHMGIATHASFFLNK-----PTIGVAKSY 147

Query: 570 LQLHGMPSREELKEKITDHMIDGSEILLDLFLDEESNAICTVRRCDKSNRSKDVNKLGKL 749
           L++ G+    E+ E       +G+    D+ ++EE                KDV    K 
Sbjct: 148 LKVAGVDF--EMPES-----FEGA--FKDIVINEEVYGRVL-------RTKKDV----KP 187

Query: 750 AFISAGHRITLKTAVNIVRICSK-----CRMPEPILLAD 851
            F+S G+ I L+T     +ICSK      R+P  + LAD
Sbjct: 188 IFVSCGNYIDLETC---TKICSKLINNDSRLPITVRLAD 223

>sp|Q60CT7|NFI_METCA Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 222

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 7/226 (3%)
 Frame = +3

Query: 204 IPSNLKLIGGIDISFDKSNN----NLACVCFGVIDSCTKKLVRKHEKIVSIIEPYIVNYL 371
           +P  ++ + G+D+ F+         +A + F  +    + +VR+  +      PY+   L
Sbjct: 35  LPDEIRTVAGVDVGFEDHGRITRAAVAVLDFPSLRPSDQAIVRRPTRF-----PYVPGLL 89

Query: 372 AFRECEHMVGTIKEFLVLYPEMKPQVILVDGNGVYHTMGFGSACQLGVRLEQEGIDIPTV 551
           +FRE   ++  ++   +L     P +ILVDG+G  H   FG AC LGV        IPT+
Sbjct: 90  SFRELPALLEALERLNLL-----PGLILVDGHGYAHPRRFGIACHLGVL-----TGIPTI 139

Query: 552 GVAKNYLQLHGMPSREELKEKITD--HMIDGSEILLDLFLDEESNAICTVRRCDKSNRSK 725
           GV K  L    + +  EL E       +IDG         DE   A+   RR  +     
Sbjct: 140 GVGKTRL----VGTHGELAEDRGSWIPLIDG---------DETVGAVVRTRRGVQP---- 182

Query: 726 DVNKLGKLAFISAGHRITLKTAVN-IVRICSKCRMPEPILLADHLA 860
                    ++S GHR++L TAV+ ++R   + R+PE    A  LA
Sbjct: 183 --------VYVSVGHRLSLPTAVDWVLRCTPRYRLPETTRQAHRLA 220

>sp|O30108|NFI_ARCFU Endonuclease V (Deoxyinosine 3'endonuclease) (Deoxyribonuclease V)
           (DNase V)
          Length = 221

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 72/260 (27%), Positives = 114/260 (43%), Gaps = 8/260 (3%)
 Frame = +3

Query: 138 LDNVESWQEELNHKIDEMNDLIIPSNLKLIGGIDISFDKSNNNLACVCFGVIDSCTKKL- 314
           L+ +   QEE++  +  + DLI    L+ + G+D +F              + SC  KL 
Sbjct: 6   LEELRRIQEEMSRSV-VLEDLIPLEELEYVVGVDQAFISDE----------VVSCAVKLT 54

Query: 315 ------VRKHEKIVSIIEPYIVNYLAFRECEHMVGTIKEFLVLYPEMKPQVILVDGNGVY 476
                 V K  ++  +  PYI  +L FRE E  V  +K  +          I+VDG+G+ 
Sbjct: 55  FPELEVVDKAVRVEKVTFPYIPTFLMFREGEPAVNAVKGLV-----DDRAAIMVDGSGIA 109

Query: 477 HTMGFGSACQLGVRLEQEGIDIPTVGVAKNYLQLHGMPSREELKEKITDHMIDGSEILLD 656
           H    G A  + ++L +     PTVG+ K  L         E+++ +   ++DGSE +  
Sbjct: 110 HPRRCGLATYIALKLRK-----PTVGITKKRL----FGEMVEVEDGLW-RLLDGSETI-- 157

Query: 657 LFLDEESNAICTVRRCDKSNRSKDVNKLGKLAFISAGHRITLKTAVNIVRICSK-CRMPE 833
                   A+ + RRC             K  FIS G  I+  +A+ + R C K  ++PE
Sbjct: 158 ------GYALKSCRRC-------------KPIFISPGSYISPDSALELTRKCLKGYKLPE 198

Query: 834 PILLADHLAKNFLEKRKNAP 893
           PI +AD L K    KR+  P
Sbjct: 199 PIRIADKLTKEV--KRELTP 216

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,074,868
Number of Sequences: 369166
Number of extensions: 2375552
Number of successful extensions: 6933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6890
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10000523555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00681

  1. Dr_sW_018_M23
  2. Dr_sW_017_N24