Planaria EST Database

DrC_00647

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00647
         (580 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9F495|OPGH_ERWCH  Glucans biosynthesis glucosyltransfera...    33   0.51 
sp|P52360|UL17_HHV7J  Protein U64                                  32   1.5  
sp|Q31673|YCX2_ASTLO  Hypothetical 15.6 kDa protein in rps12...    31   2.5  
sp|O84754|SYA_CHLTR  Alanyl-tRNA synthetase (Alanine--tRNA l...    30   4.3  

>sp|Q9F495|OPGH_ERWCH Glucans biosynthesis glucosyltransferase H
          Length = 850

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 57  IMPYVTKSGEIVNSSPWSITYFKSVITGFFTMLMLFIQTLIPIDLFGYQSNTSSN 221
           ++PYV +SG ++  +      F  V  GF+T LM F+Q LI  D +   S T+ N
Sbjct: 194 LLPYVLQSGILILFA----ILFCWVSAGFWTALMGFLQLLIGKDKYSISSTTTGN 244

>sp|P52360|UL17_HHV7J Protein U64
          Length = 439

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 250 PENLVVSVQDQLHLVHQRVDEVNLETFLCIVASIEMFQK*LYQ--N*TFCTLFRC 408
           PENL  S+ + L  V+  +DE+   TF CI  ++E+  + L Q  N  F   F C
Sbjct: 250 PENLFSSITNYLDRVNTYLDEIAERTFRCITTNMEIQNRHLPQKFNSHFQIEFNC 304

>sp|Q31673|YCX2_ASTLO Hypothetical 15.6 kDa protein in rps12-trnP intergenic region
           (ORF125a)
          Length = 125

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 457 IAKYIF*KFFYEINC-IYWFIKCD*GWCLIFYKLR*NIFIYV 579
           I KYIF  F ++I C IYWFI        IF  L  NIFIYV
Sbjct: 81  ILKYIF-YFIFDILCYIYWFI------FSIFLSLIFNIFIYV 115

>sp|O84754|SYA_CHLTR Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 875

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 104 LVYYLFQISNYRIFHNVNAIHSNINPN-RSFWLPIK 208
           LVYYL +    RI H  NAIH  I  N  S W+  K
Sbjct: 771 LVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,501,482
Number of Sequences: 369166
Number of extensions: 1286994
Number of successful extensions: 2712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2711
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00647

  1. Dr_sW_020_G19
  2. Dr_sW_017_B12