Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_B12
(580 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52360|UL17_HHV7J Protein U64 32 1.5
sp|Q31673|YCX2_ASTLO Hypothetical 15.6 kDa protein in rps12... 31 2.5
>sp|P52360|UL17_HHV7J Protein U64
Length = 439
Score = 31.6 bits (70), Expect = 1.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 250 PENLVVSVQDQLHLVHQRVDEVNLETFLCIVASIEMFQK*LYQ--N*TFCTLFRC 408
PENL S+ + L V+ +DE+ TF CI ++E+ + L Q N F F C
Sbjct: 250 PENLFSSITNYLDRVNTYLDEIAERTFRCITTNMEIQNRHLPQKFNSHFQIEFNC 304
>sp|Q31673|YCX2_ASTLO Hypothetical 15.6 kDa protein in rps12-trnP intergenic region
(ORF125a)
Length = 125
Score = 30.8 bits (68), Expect = 2.5
Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 457 IAKYIF*KFFYEINC-IYWFIKCD*GWCLIFYKLR*NIFIYV 579
I KYIF F ++I C IYWFI IF L NIFIYV
Sbjct: 81 ILKYIF-YFIFDILCYIYWFI------FSIFLSLIFNIFIYV 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,106,670
Number of Sequences: 369166
Number of extensions: 1263240
Number of successful extensions: 2507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2507
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)