Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G19
(436 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9F495|OPGH_ERWCH Glucans biosynthesis glucosyltransfera... 33 0.26
sp|P52360|UL17_HHV7J Protein U64 32 0.76
sp|O84754|SYA_CHLTR Alanyl-tRNA synthetase (Alanine--tRNA l... 30 2.2
sp|P41676|PK2_NPVAC Possible serine/threonine-protein kinase 2 28 6.5
sp|P75399|Y383_MYCPN Hypothetical protein MG265 homolog (A1... 28 6.5
>sp|Q9F495|OPGH_ERWCH Glucans biosynthesis glucosyltransferase H
Length = 850
Score = 33.1 bits (74), Expect = 0.26
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +1
Query: 10 IMPYVTKSGEIVNSSPWSITYFKSVITGFFTMLMLFIQTLIPIDLFGYQSNTSSN 174
++PYV +SG ++ + F V GF+T LM F+Q LI D + S T+ N
Sbjct: 194 LLPYVLQSGILILFA----ILFCWVSAGFWTALMGFLQLLIGKDKYSISSTTTGN 244
>sp|P52360|UL17_HHV7J Protein U64
Length = 439
Score = 31.6 bits (70), Expect = 0.76
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 203 PENLVVSVQDQLHLVHQRVDEVNLETFLCIVASIEMFQK*LYQ--N*TFCTLFRC 361
PENL S+ + L V+ +DE+ TF CI ++E+ + L Q N F F C
Sbjct: 250 PENLFSSITNYLDRVNTYLDEIAERTFRCITTNMEIQNRHLPQKFNSHFQIEFNC 304
>sp|O84754|SYA_CHLTR Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
Length = 875
Score = 30.0 bits (66), Expect = 2.2
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 57 LVYYLFQISNYRIFHNVNAIHSNINPN-RSFWLPIK 161
LVYYL + RI H NAIH I N S W+ K
Sbjct: 771 LVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 806
>sp|P41676|PK2_NPVAC Possible serine/threonine-protein kinase 2
Length = 215
Score = 28.5 bits (62), Expect = 6.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 42 SKFLSLVYYLFQISNYRIFHNVNAIHSNINPNRSF 146
SKF+ LV S + H+VN +H NINP F
Sbjct: 55 SKFVDLV------SAVKAIHSVNIVHHNINPEDIF 83
>sp|P75399|Y383_MYCPN Hypothetical protein MG265 homolog (A19_orf282)
Length = 282
Score = 28.5 bits (62), Expect = 6.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 390 DRDQISKITSHLNKVQNVQF 331
DR +ISKIT HL+ ++N+ +
Sbjct: 171 DRGRISKITKHLDAIENISY 190
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,925,716
Number of Sequences: 369166
Number of extensions: 1003913
Number of successful extensions: 2392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2391
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)