Planaria EST Database

DrC_00644

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00644
         (711 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W596|FUTSC_DROME  Microtubule-associated protein futsch       32   1.3  
sp|Q5HKD6|MQO3_STAEQ  Probable malate:quinone oxidoreductase...    31   3.7  
sp|Q8CQE8|MQO3_STAES  Probable malate:quinone oxidoreductase...    31   3.7  
sp|P73532|RECF_SYNY3  DNA replication and repair protein recF      30   8.3  
sp|Q8BMD6|CN101_MOUSE  Protein C14orf101 homolog                   30   8.3  
sp|O50052|DRL25_ARATH  Putative disease resistance protein A...    30   8.3  

>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
          Length = 5412

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
 Frame = +3

Query: 42   KSAKYPTPIHVDCLCVPSDLDKE----DFRYLFECVKSTMVYLQLEKATDLVKFVEILLE 209
            K+ K P P++VD   VP + +      DF   F+ V++   Y          +  + LLE
Sbjct: 5292 KAGKKPAPVYVDLTYVPHNGNSYYAHVDF---FKRVRAR--YYVFSGTEPSRQVYDALLE 5346

Query: 210  EKEKDGGNGFDTTFIPSLADESYFLWTHENKTRLEQCRIKIETDLSRRSI 359
             K+       + T IP+   +    W  EN+  L + RI +    SR +I
Sbjct: 5347 AKQTWEDKELEVTIIPTYDTDVLGYWVAENEELLAKHRIDLSPSASRCTI 5396

>sp|Q5HKD6|MQO3_STAEQ Probable malate:quinone oxidoreductase 3 (Malate dehydrogenase
           [acceptor] 3) (MQO 3)
          Length = 494

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 123 LFECVKSTMVYLQLEKATDLVKFVEILLEE--KEKDGGNGFDTTFIPSLADESYFLWT 290
           LFE +K   +   L  A   V  ++  +++  K K+G   +  TFIP   DE + L+T
Sbjct: 335 LFESIKPYNITTMLASAVKNVPLIKYSIDQMIKTKEGCMNYLRTFIPDAKDEDWELYT 392

>sp|Q8CQE8|MQO3_STAES Probable malate:quinone oxidoreductase 3 (Malate dehydrogenase
           [acceptor] 3) (MQO 3)
          Length = 494

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +3

Query: 123 LFECVKSTMVYLQLEKATDLVKFVEILLEE--KEKDGGNGFDTTFIPSLADESYFLWT 290
           LFE +K   +   L  A   V  ++  +++  K K+G   +  TFIP   DE + L+T
Sbjct: 335 LFESIKPYNITTMLASAVKNVPLIKYSIDQMIKTKEGCMNYLRTFIPDAKDEDWELYT 392

>sp|P73532|RECF_SYNY3 DNA replication and repair protein recF
          Length = 384

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 238 LILLSFRHWLMNLISYGPMKTRLV*NNAESRSKLI 342
           L L +FR++L   + +   KT LV NNA+ +S L+
Sbjct: 6   LYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLL 40

>sp|Q8BMD6|CN101_MOUSE Protein C14orf101 homolog
          Length = 703

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
 Frame = +3

Query: 18  DTSGNQAKKSAKYPTPIHVDCLC----VPSDLDKEDFRYLFECVKSTMVYLQLEKATDLV 185
           ++  N+    A+  TP  +  L     VP+D+  + + + ++  K  +VYLQ E   +  
Sbjct: 578 ESVANEEMWQARMKTPFFIFSLAESAAVPADVKAQLYTHAYKLYKE-IVYLQEEHPVNWH 636

Query: 186 KFVEILLEEKEKDGGNGFDTTFIPSLADESYFLWTHE 296
           K   I  E   +  G G D   + S A   + L+T +
Sbjct: 637 KNYAIACERMLRLPGTGIDPEVLLSEAIRHFHLYTQK 673

>sp|O50052|DRL25_ARATH Putative disease resistance protein At4g19050
          Length = 1181

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 171 ATDLVKFVEILLEEKEKDGGNGFDTTFIPSLADESYFLWTHENKTRLEQCRI 326
           ATDLV+ +E+ LEEK++        T +P LAD    +  + NK  L  C +
Sbjct: 664 ATDLVEMLEVCLEEKKELRILDMSKTSLPELADTIADV-VNLNKLLLRNCSL 714

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,896,079
Number of Sequences: 369166
Number of extensions: 1413907
Number of successful extensions: 2924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2923
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00644

  1. Dr_sW_017_B19
  2. Dr_sW_017_A20