Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_B19
(272 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5HKD6|MQO3_STAEQ Probable malate:quinone oxidoreductase... 31 1.0
sp|Q8CQE8|MQO3_STAES Probable malate:quinone oxidoreductase... 31 1.0
sp|Q7U923|HIS62_SYNPX Putative imidazole glycerol phosphate... 28 5.1
sp|P73532|RECF_SYNY3 DNA replication and repair protein recF 28 5.1
sp|O75460|ERN1_HUMAN Serine/threonine-protein kinase/endori... 28 6.6
sp|Q5JEX8|HAM1_PYRKO HAM1 protein homolog 28 6.6
sp|Q9EQY0|ERN1_MOUSE Serine/threonine-protein kinase/endori... 28 6.6
sp|O50052|DRL25_ARATH Putative disease resistance protein A... 28 6.6
>sp|Q5HKD6|MQO3_STAEQ Probable malate:quinone oxidoreductase 3 (Malate dehydrogenase
[acceptor] 3) (MQO 3)
Length = 494
Score = 30.8 bits (68), Expect = 1.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 48 LFECVKSTMVYLQLGKATDLVKFVEILLEE--KEKDGGNGFDTTFIPSLGDESYFLWT 215
LFE +K + L A V ++ +++ K K+G + TFIP DE + L+T
Sbjct: 335 LFESIKPYNITTMLASAVKNVPLIKYSIDQMIKTKEGCMNYLRTFIPDAKDEDWELYT 392
>sp|Q8CQE8|MQO3_STAES Probable malate:quinone oxidoreductase 3 (Malate dehydrogenase
[acceptor] 3) (MQO 3)
Length = 494
Score = 30.8 bits (68), Expect = 1.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 48 LFECVKSTMVYLQLGKATDLVKFVEILLEE--KEKDGGNGFDTTFIPSLGDESYFLWT 215
LFE +K + L A V ++ +++ K K+G + TFIP DE + L+T
Sbjct: 335 LFESIKPYNITTMLASAVKNVPLIKYSIDQMIKTKEGCMNYLRTFIPDAKDEDWELYT 392
>sp|Q7U923|HIS62_SYNPX Putative imidazole glycerol phosphate synthase subunit hisF2 (IGP
synthase cyclase subunit) (IGP synthase subunit hisF2)
(ImGP synthase subunit hisF2) (IGPS subunit hisF2)
Length = 269
Score = 28.5 bits (62), Expect = 5.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 27 DKEDFRYLFECVKSTMVY--LQLGKATDLVKFVEILLEEKEKDG-GNGFDTTFIPSLGDE 197
D DF++ + + Y +L D + F EILL+ ++DG G GFD T + D+
Sbjct: 137 DHGDFKFFIDNGLIEVQYNIQELISFLDPLPFCEILLQSVDRDGTGTGFDLTLANTFRDQ 196
>sp|P73532|RECF_SYNY3 DNA replication and repair protein recF
Length = 384
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 163 LILLSFRHWVMNLISYGPMKTRLV*NNAESRSKLI 267
L L +FR+++ + + KT LV NNA+ +S L+
Sbjct: 6 LYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLL 40
>sp|O75460|ERN1_HUMAN Serine/threonine-protein kinase/endoribonuclease IRE1 precursor
(Inositol-requiring 1) (hIRE1p) (IRE1a) (Ire1-alpha)
(Endoplasmic reticulum-to-nucleus signaling 1)
[Includes: Serine/threonine-protein kinase ;
Endoribonuclease ]
Length = 977
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 81 LQLGKATDLVKFVEILLEEKEKDGGNGFDTTFIPS-----LGDESYFLWTHENKTR 233
L +GK D+ +++L EK++ + F + PS LG Y + ++ KTR
Sbjct: 116 LYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLCPSTSLLYLGRTEYTITMYDTKTR 171
>sp|Q5JEX8|HAM1_PYRKO HAM1 protein homolog
Length = 184
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 135 EKEKDGGNGFDTTFIPSLGDESYFLWTHENKTRL 236
E GG GFD FIP D ++ T E K R+
Sbjct: 132 EPRGSGGFGFDPIFIPEGFDRTFAEMTTEEKNRI 165
>sp|Q9EQY0|ERN1_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE1 precursor
(Inositol-requiring 1) (IRE1a) (Ire1-alpha) (Endoplasmic
reticulum-to-nucleus signaling 1) [Includes:
Serine/threonine-protein kinase ; Endoribonuclease ]
Length = 977
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 81 LQLGKATDLVKFVEILLEEKEKDGGNGFDTTFIPS-----LGDESYFLWTHENKTR 233
L +GK D+ +++L EK++ + F + PS LG Y + ++ KTR
Sbjct: 118 LYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLCPSTSLLYLGRTEYTITMYDTKTR 173
>sp|O50052|DRL25_ARATH Putative disease resistance protein At4g19050
Length = 1181
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 96 ATDLVKFVEILLEEKEKDGGNGFDTTFIPSLGDESYFLWTHENKTRLEQCRI 251
ATDLV+ +E+ LEEK++ T +P L D + + NK L C +
Sbjct: 664 ATDLVEMLEVCLEEKKELRILDMSKTSLPELADTIADV-VNLNKLLLRNCSL 714
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,135,946
Number of Sequences: 369166
Number of extensions: 490673
Number of successful extensions: 1118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)