Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A20
(711 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch 32 1.3
sp|Q5HKD6|MQO3_STAEQ Probable malate:quinone oxidoreductase... 31 3.7
sp|Q8CQE8|MQO3_STAES Probable malate:quinone oxidoreductase... 31 3.7
sp|P73532|RECF_SYNY3 DNA replication and repair protein recF 30 8.3
sp|Q8BMD6|CN101_MOUSE Protein C14orf101 homolog 30 8.3
sp|O50052|DRL25_ARATH Putative disease resistance protein A... 30 8.3
>sp|Q9W596|FUTSC_DROME Microtubule-associated protein futsch
Length = 5412
Score = 32.3 bits (72), Expect = 1.3
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Frame = +3
Query: 42 KSAKYPTPIHVDCLCVPSDLDKE----DFRYLFECVKSTMVYLQLEKATDLVKFVEILLE 209
K+ K P P++VD VP + + DF F+ V++ Y + + LLE
Sbjct: 5292 KAGKKPAPVYVDLTYVPHNGNSYYAHVDF---FKRVRAR--YYVFSGTEPSRQVYDALLE 5346
Query: 210 EKEKDGGNGFDTTFIPSLADESYFLWTHENKTRLEQCRIKIETDLSRRSI 359
K+ + T IP+ + W EN+ L + RI + SR +I
Sbjct: 5347 AKQTWEDKELEVTIIPTYDTDVLGYWVAENEELLAKHRIDLSPSASRCTI 5396
>sp|Q5HKD6|MQO3_STAEQ Probable malate:quinone oxidoreductase 3 (Malate dehydrogenase
[acceptor] 3) (MQO 3)
Length = 494
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 123 LFECVKSTMVYLQLEKATDLVKFVEILLEE--KEKDGGNGFDTTFIPSLADESYFLWT 290
LFE +K + L A V ++ +++ K K+G + TFIP DE + L+T
Sbjct: 335 LFESIKPYNITTMLASAVKNVPLIKYSIDQMIKTKEGCMNYLRTFIPDAKDEDWELYT 392
>sp|Q8CQE8|MQO3_STAES Probable malate:quinone oxidoreductase 3 (Malate dehydrogenase
[acceptor] 3) (MQO 3)
Length = 494
Score = 30.8 bits (68), Expect = 3.7
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 123 LFECVKSTMVYLQLEKATDLVKFVEILLEE--KEKDGGNGFDTTFIPSLADESYFLWT 290
LFE +K + L A V ++ +++ K K+G + TFIP DE + L+T
Sbjct: 335 LFESIKPYNITTMLASAVKNVPLIKYSIDQMIKTKEGCMNYLRTFIPDAKDEDWELYT 392
>sp|P73532|RECF_SYNY3 DNA replication and repair protein recF
Length = 384
Score = 29.6 bits (65), Expect = 8.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 238 LILLSFRHWLMNLISYGPMKTRLV*NNAESRSKLI 342
L L +FR++L + + KT LV NNA+ +S L+
Sbjct: 6 LYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLL 40
>sp|Q8BMD6|CN101_MOUSE Protein C14orf101 homolog
Length = 703
Score = 29.6 bits (65), Expect = 8.3
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Frame = +3
Query: 18 DTSGNQAKKSAKYPTPIHVDCLC----VPSDLDKEDFRYLFECVKSTMVYLQLEKATDLV 185
++ N+ A+ TP + L VP+D+ + + + ++ K +VYLQ E +
Sbjct: 578 ESVANEEMWQARMKTPFFIFSLAESAAVPADVKAQLYTHAYKLYKE-IVYLQEEHPVNWH 636
Query: 186 KFVEILLEEKEKDGGNGFDTTFIPSLADESYFLWTHE 296
K I E + G G D + S A + L+T +
Sbjct: 637 KNYAIACERMLRLPGTGIDPEVLLSEAIRHFHLYTQK 673
>sp|O50052|DRL25_ARATH Putative disease resistance protein At4g19050
Length = 1181
Score = 29.6 bits (65), Expect = 8.3
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 171 ATDLVKFVEILLEEKEKDGGNGFDTTFIPSLADESYFLWTHENKTRLEQCRI 326
ATDLV+ +E+ LEEK++ T +P LAD + + NK L C +
Sbjct: 664 ATDLVEMLEVCLEEKKELRILDMSKTSLPELADTIADV-VNLNKLLLRNCSL 714
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,896,079
Number of Sequences: 369166
Number of extensions: 1413907
Number of successful extensions: 2924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2923
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)