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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00643
         (982 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27625|RPC1_PLAFA  DNA-directed RNA polymerase III larges...    45   3e-04
sp|P04931|ARP_PLAFA  Asparagine-rich protein (AG319) (ARP)         43   0.001
sp|P35352|CAR3_DICDI  Cyclic AMP receptor 3 (cAMP receptor 3)      40   0.013
sp|P18160|KYK1_DICDI  Non-receptor tyrosine kinase spore lys...    40   0.013
sp|Q03100|CYAA_DICDI  Adenylate cyclase, aggregation specifi...    37   0.11 
sp|P18494|GLN3_YEAST  Nitrogen regulatory protein GLN3             36   0.15 
sp|Q835U8|IF2_ENTFA  Translation initiation factor IF-2            36   0.19 
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            36   0.19 
sp|P18899|DDR48_YEAST  Stress protein DDR48 (DNA damage-resp...    35   0.25 
sp|Q7M3S9|RNGB_DICDI  Ring finger protein B (Protein rngB)         35   0.25 

>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
          Length = 2339

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
 Frame = +2

Query: 284  MIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSN 463
            ++   N +      Q+Q+   ++     +N +NN   IN N  N+    +N  N  N +N
Sbjct: 1049 LLSYKNKIPYLPHVQHQNKTSNM-----NNIYNNMNNINNNDSNRSIIYNNDSNMNNINN 1103

Query: 464  GGLMFNDI--NSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRN 637
                 N I  N+ +++  H+  + +S   ++ S+++      S  N  H+ N N   I N
Sbjct: 1104 NDSNMNSIHNNNSNMNNIHNNDSNRSIIHNNDSNMNSIHNNDSNMNSIHNNNSNMNNIHN 1163

Query: 638  SDWNGYSSYTSPNDSHLSSFQEGNFN 715
            +D N   S    NDS+++S    + N
Sbjct: 1164 NDSN--RSIIHNNDSNMNSIHNNDSN 1187

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 2/144 (1%)
 Frame = +2

Query: 239  NNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQ 418
            NNN   D + + I     N NN++      N     +  M   HN  +N+  I+ N  N 
Sbjct: 1082 NNN---DSNRSIIYNNDSNMNNINNNDSNMNSIHNNNSNMNNIHNNDSNRSIIHNNDSNM 1138

Query: 419  ISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNR 598
                ++ HN           ND N  S+H ++S  N                + ++  NR
Sbjct: 1139 ----NSIHN-----------NDSNMNSIHNNNSNMN---------------NIHNNDSNR 1168

Query: 599  S--HSMNENSAGIRNSDWNGYSSY 664
            S  H+ + N   I N+D N  ++Y
Sbjct: 1169 SIIHNNDSNMNSIHNNDSNNNNNY 1192

>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
          Length = 537

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 7/179 (3%)
 Frame = +2

Query: 104 TRLNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMT 283
           T+ N    N+N   N+NN   + +  V                   NN +   +S +I  
Sbjct: 181 TQNNNDNMNINEDNNNNNNNNNNNNGV--------------FSNYQNNNMNRNNSINIKR 226

Query: 284 MIMNSNNVD-----MYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNE 448
            + N+NN++     M  + +NQ+S  +  M  N+    N    N N     +   N +N 
Sbjct: 227 NLNNNNNINNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNNN 286

Query: 449 FNYSNGGLMFNDINSQSLHG-SHSWKNAQSAFCD-SPSDISHAALRSSGYNRSHSMNEN 619
            N++    M +++N+   H  +++  N  S   D SP+  +H  +    YN + S   N
Sbjct: 287 MNHNMNNNMNHNMNNNMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTAN 345

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 16/270 (5%)
 Frame = +2

Query: 113 NQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIM 292
           N+  +N + + N++N    TS  ++                 N N     +     T  M
Sbjct: 114 NKYDNNNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFYTNYM 173

Query: 293 NSNNVDMYQ-RYQNQHSAPDLQMGMNHNQFNNQFPINY-----NCQNQISTGSNYHNEFN 454
           N NN+   Q    N +   D     N+N  NN    NY     N  N I+   N +N  N
Sbjct: 174 NKNNLKFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNN 233

Query: 455 YSN-----GGLMFNDINSQSLHGSHSWKNAQSAFCDS-----PSDISHAALRSSGYNRSH 604
            +N     G    N  ++ + + +++++N +++  ++      ++++H    +  +N ++
Sbjct: 234 INNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNNNMNHNMNN 293

Query: 605 SMNENSAGIRNSDWNGYSSYTSPNDSHLSSFQEGNFNMMPMRVPNVQCTPANVSGNDPQL 784
           +MN N     N + N   +  +  DS +S     +  M  M   N +   AN     P  
Sbjct: 294 NMNHNMNNNMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTAN-----PNQ 348

Query: 785 FSRQQTSHSVNH*QKIIVFNYYYYIKSSTH 874
            + +QT++  N  ++    N Y Y  ++ H
Sbjct: 349 MNFEQTNND-NMKRENNNMNNYGYDDNTVH 377

 Score = 40.4 bits (93), Expect = 0.008
 Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
 Frame = +2

Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGL 472
           N+NN D    YQN +   D +  MN   F NQ+  NY     ++  +  H+  +     L
Sbjct: 8   NNNNDDGNINYQNTNEFKDNKKNMN---FKNQYNNNYKFDENMNNSNTMHSRNSNVEEHL 64

Query: 473 MFN--DINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRS----HSMNENSAGIR 634
             N  D+N+ +++   + +   S+F ++ ++  +    + G N +    +  + N++ ++
Sbjct: 65  RNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDNNNSSMK 124

Query: 635 NSDWN 649
           N+D N
Sbjct: 125 NTDNN 129

 Score = 36.2 bits (82), Expect = 0.15
 Identities = 36/201 (17%), Positives = 76/201 (37%)
 Frame = +2

Query: 110 LNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMI 289
           +N  M+N N+  N NN + + ++                    NNN     +   +    
Sbjct: 295 MNHNMNN-NMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQ 353

Query: 290 MNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGG 469
            N++N+       N +   D  + +N+N  +  F         +   +NY N  N  N  
Sbjct: 354 TNNDNMKRENNNMNNYGYDDNTVHVNNNTPSTDF-----FSRAVGYNNNYLNNNNNMNSA 408

Query: 470 LMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRNSDWN 649
           +  N  N  ++   +S +N   A  D+   +++    ++  N + S+N N+    N+++N
Sbjct: 409 VNNNSSNGNNMKNENS-ENKNVA--DNNDSLNNNKNNNNNINMNESINNNNTLNNNNEYN 465

Query: 650 GYSSYTSPNDSHLSSFQEGNF 712
             ++    +D       E  +
Sbjct: 466 NQNNNEDEDDDDWGELGEDKY 486

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 3/141 (2%)
 Frame = +2

Query: 50  NSRAPGQPYIHDKPSPSETRLNQQMSNLNLVGNS---NNIIPSTSTAVQXXXXXXXXXXX 220
           N+  P Q       + +  R N  M+N     N+   NN  PST                
Sbjct: 342 NTANPNQMNFEQTNNDNMKRENNNMNNYGYDDNTVHVNNNTPSTD-------------FF 388

Query: 221 XXXXXXNNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPIN 400
                 NNN L + ++ +      +SN  +M        +  D    +N+N+ NN    N
Sbjct: 389 SRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKNENSENKNVADNNDSLNNNKNNNN---N 445

Query: 401 YNCQNQISTGSNYHNEFNYSN 463
            N    I+  +  +N   Y+N
Sbjct: 446 INMNESINNNNTLNNNNEYNN 466

>sp|P35352|CAR3_DICDI Cyclic AMP receptor 3 (cAMP receptor 3)
          Length = 490

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
 Frame = +2

Query: 305 VDMYQRYQ-NQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGLMFN 481
           V+  QR + N+++     +G+++N  NN    N+N  N  +  +N++N  N +N   + N
Sbjct: 294 VETQQRLEKNKNNNNHSPVGLSNNAQNNNHHHNHN-NNHNNNHNNHNNNNNNNNSDFVNN 352

Query: 482 DI-----------------NSQSLHGSHSWKN---AQSAFCDSPSDISHAALRSSGYNRS 601
           D                  NS+S++G+ ++K    +Q    DSP+        S+  N +
Sbjct: 353 DSSNYYTASMIESFSVQNENSKSINGADNFKQNGASQQDDKDSPN--------SNNNNNN 404

Query: 602 HSMNENSAGIRNSDWNGYSSYTSPNDSHLSSFQEGNFNMMPM 727
           ++ N N+    N++ N  ++Y   N+  +      N N +PM
Sbjct: 405 NNNNNNNNNNNNNNNNNNNNY---NNKDIEPIDNCNTNSIPM 443

>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
           1)
          Length = 1584

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 21/207 (10%)
 Frame = +2

Query: 113 NQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIM 292
           N   +N N++GN   I  +T+T+                   NNN   + ++ +      
Sbjct: 413 NNNNNNNNIIGNGK-ITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNN------ 465

Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGL 472
           N+NN +      N +S+       N+N  NN    N +  N  +  +N ++  N +N  +
Sbjct: 466 NNNNNNNNNNNNNSNSS-----NTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNI 520

Query: 473 MFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSH--SMNENSAGIR---- 634
             N+ N+ + +  +  K       D  S  S     SSG N S   S+  NS+ I+    
Sbjct: 521 NNNNNNNNNNNNIYLTKKPSIGSTDESSTGSLGGNNSSGNNNSSSGSIGNNSSIIKQRSP 580

Query: 635 ---------------NSDWNGYSSYTS 670
                          N++ N YSSY S
Sbjct: 581 PHSINGPLMLPPSSTNNNNNIYSSYNS 607

>sp|Q03100|CYAA_DICDI Adenylate cyclase, aggregation specific (ATP pyrophosphate-lyase)
            (Adenylyl cyclase)
          Length = 1407

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
 Frame = +2

Query: 365  NHNQFNNQFPINYNCQNQISTGSNYHNEFNYSN------GGLMFNDINSQSLHGSHSWKN 526
            N+N  NN +  NYN  N  +  +N +NE+  S+      G  +   I+  + +     K 
Sbjct: 759  NNNYNNNNYNNNYNNNNLNNNSNNNNNEYGSSSSSSSVLGEAVTEQIDCNNTNPPLQHKK 818

Query: 527  AQSAFCDSPSDISHAALRSSG--YNRSHSMNENSAGIRNSDWNGYSSYTSPNDS 682
            +QS   ++ +DI   +L S+    + + + N N+    N++ N  + Y + N++
Sbjct: 819  SQSILTNNENDIVSPSLTSNSPILDTTVNNNNNNNNTNNNNKNQNNIYGNNNNN 872

>sp|P18494|GLN3_YEAST Nitrogen regulatory protein GLN3
          Length = 730

 Score = 36.2 bits (82), Expect = 0.15
 Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 33/220 (15%)
 Frame = +2

Query: 86   KPSPSETRLNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXN---NNCLG 256
            KPSP+     Q   N+NL+  +NN+    S A                   N   N+   
Sbjct: 506  KPSPNSANSQQFNMNMNLMNTTNNVSAGNSVASSPRIISSANFNSNSPLQQNLLSNSFQR 565

Query: 257  DPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSN 436
               +     M  N++    +     Q      Q+ +N N   N    N+N  N +ST S 
Sbjct: 566  QGMNIPRRKMSRNASYSSSFMAASLQQLHEQQQVDVNSNTNTNSNRQNWNSSNSVSTNSR 625

Query: 437  YHNEFNYSNGGLMFN--------------------------DINSQSLHGSHSWKNAQSA 538
              N  +      +FN                          +  S S   +H + N  S+
Sbjct: 626  SSNFVSQKPNFDIFNTPVDSPSVSRPSSRKSHTSLLSQQLQNSESNSFISNHKFNNRLSS 685

Query: 539  FCDSP----SDISHAALRSSGYNRSHSMNENSAGIRNSDW 646
               SP    +D+S     S   +   S  E+SA     DW
Sbjct: 686  DSTSPIKYEADVSAGGKISEDNSTKGSSKESSAIADELDW 725

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
 Frame = +2

Query: 434 NYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMN 613
           N +N  N + GG  FN + S  L  S S+ ++ + F    +  S+A L S+   R H+ N
Sbjct: 416 NTNNILNVNRGGYNFNSVPSPVLMNSQSYNSSNANF----NGASNANLNSNNLMR-HNSN 470

Query: 614 ENSAGIRNSDWNGYSSYTSPNDSHLSS----------------FQEGNFNMMPMRVPNVQ 745
             +   R S     +S  + + S  SS                 Q+ N NM  M   N  
Sbjct: 471 TVTPNFRRSSRRSSTSSNTSSSSKSSSRSVVPILPKPSPNSANSQQFNMNMNLMNTTN-N 529

Query: 746 CTPANVSGNDPQLFS 790
            +  N   + P++ S
Sbjct: 530 VSAGNSVASSPRIIS 544

>sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2
          Length = 798

 Score = 35.8 bits (81), Expect = 0.19
 Identities = 26/100 (26%), Positives = 41/100 (41%)
 Frame = +2

Query: 239 NNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQ 418
           NN      S+T   +   N+NN +   +  N  +    +   N+N  NNQ     N  N 
Sbjct: 108 NNQNRHGQSNTQNRSNQTNTNNQNRNTQNNNGSTTNQNRTSQNNNGGNNQNRGGQNRNNN 167

Query: 419 ISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSA 538
              G N +N  N++N     N  N +   G H  ++A+ A
Sbjct: 168 FGGGQNRNNRNNFNNQNR--NRFNKKGKKGKHQQESAKPA 205

>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 35.8 bits (81), Expect = 0.19
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 18/244 (7%)
 Frame = +2

Query: 23  QQNSDFFNLN---SRAPGQPYIHDKP------SPSETRLNQQMSNLNLVGNSNNIIPSTS 175
           +  SD+ N +   S   G P    +P      SPS +  +  + N  L  N+NN   + +
Sbjct: 220 ENESDYNNTSFSDSNTDGTPKKRGRPPKAKGESPSASPTHNTLGNGILNSNNNNNNNNNN 279

Query: 176 TAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQ 355
           + +                  NNN     ++ +      N+NN        N ++  +  
Sbjct: 280 SNINNIN--------------NNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNT 325

Query: 356 MGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQS 535
              N+N  NN    N N  N  +  +N +N  N SN     N+ N Q+ + +++  N+ +
Sbjct: 326 NNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNNNNNTSNNSNT 385

Query: 536 AFCDSPSDISHAALRSSGYNRSHSMNE--------NSAGIRNSDWNGYSSYTS-PNDSHL 688
               + +          G N ++S+N           +G+ +SD N  ++  S P+ ++ 
Sbjct: 386 TTATTTA--------PGGNNLTNSLNNAGNLGNLGRVSGLHSSDPNNPNAQKSFPDSTNT 437

Query: 689 SSFQ 700
             FQ
Sbjct: 438 MDFQ 441

>sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48)
           (YP 75) (Flocculent-specific protein)
          Length = 430

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 5/145 (3%)
 Frame = +2

Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGL 472
           +SNN D Y    N         G N+N        +Y   N  S GSN ++ +  +N   
Sbjct: 73  DSNNNDSYGSNNND------SYGSNNND-------SYGSNNNDSYGSNNNDSYGSNNDDS 119

Query: 473 MFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRNSDWNG 652
             +    +S +GS    N   ++  S ++ S+ +  +  Y    S N +S G  N D  G
Sbjct: 120 YGSSNKKKSSYGS----NNDDSYGSSNNNDSYGSNNNDSYG---SNNNDSYGSNNDDSYG 172

Query: 653 YS-----SYTSPNDSHLSSFQEGNF 712
            S     SY S ND    S  + ++
Sbjct: 173 SSNKNKSSYGSNNDDSYGSNNDDSY 197

 Score = 35.0 bits (79), Expect = 0.32
 Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 6/210 (2%)
 Frame = +2

Query: 83  DKPSPSETRLNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDP 262
           D+    E+++ QQ SN ++  N +N   +  +                    NN+  G  
Sbjct: 51  DRFDKMESKVRQQFSNTSINDNDSN---NNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSN 107

Query: 263 SSTDIMTMIMNSNNVDMY----QRYQNQHSAPDLQMGMNHNQ--FNNQFPINYNCQNQIS 424
           ++         SNN D Y    ++  +  S  D   G ++N   + +    +Y   N  S
Sbjct: 108 NNDSY-----GSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNNDSYGSNNNDS 162

Query: 425 TGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSH 604
            GSN  + +  SN        N+   +GS+   N  S    +    S+ +  +  Y    
Sbjct: 163 YGSNNDDSYGSSNKNKSSYGSNNDDSYGSN---NDDSYGSSNKKKSSYGSSNNDSYG--- 216

Query: 605 SMNENSAGIRNSDWNGYSSYTSPNDSHLSS 694
           S N++S G  N+D     SY S ND    S
Sbjct: 217 SNNDDSYGSNNND-----SYGSNNDDSYGS 241

 Score = 34.7 bits (78), Expect = 0.42
 Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 14/147 (9%)
 Frame = +2

Query: 296 SNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNY--SNGG 469
           SNN D Y     + S+       ++   NN    +Y   N  S GS+  N+ +Y  S+  
Sbjct: 233 SNNDDSYGSSNKKKSSYGSNNDDSYGSSNNN--DSYGSNNDDSYGSSNKNKSSYGSSSND 290

Query: 470 LMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSH-------SMNENSAG 628
             +   N+   +GS    N + +   S +D S+ +     Y  S+       S N +S G
Sbjct: 291 DSYGSSNNDDSYGS---SNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYG 347

Query: 629 IRNSDWNG-----YSSYTSPNDSHLSS 694
             N D  G      SSY S ND    S
Sbjct: 348 SNNDDSYGSSNKKKSSYGSNNDDSYGS 374

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
 Frame = +2

Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQF---NNQFPINYNCQNQISTGSNYHNEFNYSN 463
           +SNN D Y    N         G N+N     NN      + +N+ S GSN  + +  +N
Sbjct: 140 SSNNNDSYGSNNND------SYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNN 193

Query: 464 GGLMFNDINSQSLHGS---HSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIR 634
                +    +S +GS    S+ +       S ++ S+ +     Y  S+   ++S G  
Sbjct: 194 DDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNK-KKSSYGSN 252

Query: 635 NSDWNGYS----SYTSPNDSHLSS 694
           N D  G S    SY S ND    S
Sbjct: 253 NDDSYGSSNNNDSYGSNNDDSYGS 276

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
 Frame = +2

Query: 239 NNNCLGDPSSTDIMTMIMNSNNVDMY----QRYQNQHSAPDLQMGMNHNQF---NNQFPI 397
           N +  G  S+ D      +SNN D Y    ++  +  S  D   G N++     +N+   
Sbjct: 280 NKSSYGSSSNDDSYG---SSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKS 336

Query: 398 NYNCQNQISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAAL 577
           +Y   N  S GSN  + +  SN          +S +GS    N   ++  S ++ S+ + 
Sbjct: 337 SYGSSNNDSYGSNNDDSYGSSN--------KKKSSYGS----NNDDSYGSSNNNDSYGSN 384

Query: 578 RSSGYNRSHSMNENSAGIRN-SDWNGYSSYTSPN 676
               Y  S + N+NS G  N    N   SY S N
Sbjct: 385 NDDSYG-SSNRNKNSYGSSNYGSSNNDDSYGSSN 417

>sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB)
          Length = 943

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 1/185 (0%)
 Frame = +2

Query: 140 VGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIMNSNNVDMYQ 319
           + NSN+I+ S +T++                   +  +   SS+         +   +  
Sbjct: 336 ITNSNSIVGSPNTSISCGVSNSGASSSSGGGISGHPSILSSSSSSSYLSTSPLSTSSLAS 395

Query: 320 RYQNQHSAPDLQMGMNHNQFNNQFPINYNCQN-QISTGSNYHNEFNYSNGGLMFNDINSQ 496
            YQ+  S   LQ   N NQ NN    N N  N Q +T +  +N  N +N     N+ N+ 
Sbjct: 396 SYQSSQS---LQFNQNQNQNNNNNNNNNNNNNIQTTTTTTTNNNNNNNNN----NNNNNN 448

Query: 497 SLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRNSDWNGYSSYTSPN 676
           + +   + +  Q     SP  +     RS+     +S+N +S+ I ++     ++ T+  
Sbjct: 449 NNNVESNQQQQQIQHQTSPMSV---LSRSNSNISLNSLNSSSSSILSTPSTLSTTTTTTT 505

Query: 677 DSHLS 691
            SH S
Sbjct: 506 TSHAS 510

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,749,916
Number of Sequences: 369166
Number of extensions: 2193114
Number of successful extensions: 5417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5175
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10287619925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_017_A10
2. Dr_sW_012_O09