Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A10
(981 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III larges... 45 3e-04
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 43 0.001
sp|P35352|CAR3_DICDI Cyclic AMP receptor 3 (cAMP receptor 3) 40 0.013
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 40 0.013
sp|Q03100|CYAA_DICDI Adenylate cyclase, aggregation specifi... 37 0.11
sp|P18494|GLN3_YEAST Nitrogen regulatory protein GLN3 36 0.15
sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2 36 0.19
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 36 0.19
sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-resp... 35 0.25
sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB) 35 0.25
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
Length = 2339
Score = 45.1 bits (105), Expect = 3e-04
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Frame = +2
Query: 284 MIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSN 463
++ N + Q+Q+ ++ +N +NN IN N N+ +N N N +N
Sbjct: 1049 LLSYKNKIPYLPHVQHQNKTSNM-----NNIYNNMNNINNNDSNRSIIYNNDSNMNNINN 1103
Query: 464 GGLMFNDI--NSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRN 637
N I N+ +++ H+ + +S ++ S+++ S N H+ N N I N
Sbjct: 1104 NDSNMNSIHNNNSNMNNIHNNDSNRSIIHNNDSNMNSIHNNDSNMNSIHNNNSNMNNIHN 1163
Query: 638 SDWNGYSSYTSPNDSHLSSFQEGNFN 715
+D N S NDS+++S + N
Sbjct: 1164 NDSN--RSIIHNNDSNMNSIHNNDSN 1187
Score = 30.8 bits (68), Expect = 6.1
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 2/144 (1%)
Frame = +2
Query: 239 NNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQ 418
NNN D + + I N NN++ N + M HN +N+ I+ N N
Sbjct: 1082 NNN---DSNRSIIYNNDSNMNNINNNDSNMNSIHNNNSNMNNIHNNDSNRSIIHNNDSNM 1138
Query: 419 ISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNR 598
++ HN ND N S+H ++S N + ++ NR
Sbjct: 1139 ----NSIHN-----------NDSNMNSIHNNNSNMN---------------NIHNNDSNR 1168
Query: 599 S--HSMNENSAGIRNSDWNGYSSY 664
S H+ + N I N+D N ++Y
Sbjct: 1169 SIIHNNDSNMNSIHNNDSNNNNNY 1192
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 43.1 bits (100), Expect = 0.001
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 7/179 (3%)
Frame = +2
Query: 104 TRLNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMT 283
T+ N N+N N+NN + + V NN + +S +I
Sbjct: 181 TQNNNDNMNINEDNNNNNNNNNNNNGV--------------FSNYQNNNMNRNNSINIKR 226
Query: 284 MIMNSNNVD-----MYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNE 448
+ N+NN++ M + +NQ+S + M N+ N N N + N +N
Sbjct: 227 NLNNNNNINNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNNN 286
Query: 449 FNYSNGGLMFNDINSQSLHG-SHSWKNAQSAFCD-SPSDISHAALRSSGYNRSHSMNEN 619
N++ M +++N+ H +++ N S D SP+ +H + YN + S N
Sbjct: 287 MNHNMNNNMNHNMNNNMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTAN 345
Score = 42.7 bits (99), Expect = 0.002
Identities = 55/270 (20%), Positives = 107/270 (39%), Gaps = 16/270 (5%)
Frame = +2
Query: 113 NQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIM 292
N+ +N + + N++N TS ++ N N + T M
Sbjct: 114 NKYDNNNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFYTNYM 173
Query: 293 NSNNVDMYQ-RYQNQHSAPDLQMGMNHNQFNNQFPINY-----NCQNQISTGSNYHNEFN 454
N NN+ Q N + D N+N NN NY N N I+ N +N N
Sbjct: 174 NKNNLKFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNN 233
Query: 455 YSN-----GGLMFNDINSQSLHGSHSWKNAQSAFCDS-----PSDISHAALRSSGYNRSH 604
+N G N ++ + + +++++N +++ ++ ++++H + +N ++
Sbjct: 234 INNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNNNMNHNMNN 293
Query: 605 SMNENSAGIRNSDWNGYSSYTSPNDSHLSSFQEGNFNMMPMRVPNVQCTPANVSGNDPQL 784
+MN N N + N + + DS +S + M M N + AN P
Sbjct: 294 NMNHNMNNNMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTAN-----PNQ 348
Query: 785 FSRQQTSHSVNH*QKIIVFNYYYYIKSSTH 874
+ +QT++ N ++ N Y Y ++ H
Sbjct: 349 MNFEQTNND-NMKRENNNMNNYGYDDNTVH 377
Score = 40.4 bits (93), Expect = 0.008
Identities = 28/125 (22%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Frame = +2
Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGL 472
N+NN D YQN + D + MN F NQ+ NY ++ + H+ + L
Sbjct: 8 NNNNDDGNINYQNTNEFKDNKKNMN---FKNQYNNNYKFDENMNNSNTMHSRNSNVEEHL 64
Query: 473 MFN--DINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRS----HSMNENSAGIR 634
N D+N+ +++ + + S+F ++ ++ + + G N + + + N++ ++
Sbjct: 65 RNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDNNNSSMK 124
Query: 635 NSDWN 649
N+D N
Sbjct: 125 NTDNN 129
Score = 36.2 bits (82), Expect = 0.15
Identities = 36/201 (17%), Positives = 76/201 (37%)
Frame = +2
Query: 110 LNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMI 289
+N M+N N+ N NN + + ++ NNN + +
Sbjct: 295 MNHNMNN-NMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQ 353
Query: 290 MNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGG 469
N++N+ N + D + +N+N + F + +NY N N N
Sbjct: 354 TNNDNMKRENNNMNNYGYDDNTVHVNNNTPSTDF-----FSRAVGYNNNYLNNNNNMNSA 408
Query: 470 LMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRNSDWN 649
+ N N ++ +S +N A D+ +++ ++ N + S+N N+ N+++N
Sbjct: 409 VNNNSSNGNNMKNENS-ENKNVA--DNNDSLNNNKNNNNNINMNESINNNNTLNNNNEYN 465
Query: 650 GYSSYTSPNDSHLSSFQEGNF 712
++ +D E +
Sbjct: 466 NQNNNEDEDDDDWGELGEDKY 486
Score = 31.6 bits (70), Expect = 3.6
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 3/141 (2%)
Frame = +2
Query: 50 NSRAPGQPYIHDKPSPSETRLNQQMSNLNLVGNS---NNIIPSTSTAVQXXXXXXXXXXX 220
N+ P Q + + R N M+N N+ NN PST
Sbjct: 342 NTANPNQMNFEQTNNDNMKRENNNMNNYGYDDNTVHVNNNTPSTD-------------FF 388
Query: 221 XXXXXXNNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPIN 400
NNN L + ++ + +SN +M + D +N+N+ NN N
Sbjct: 389 SRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKNENSENKNVADNNDSLNNNKNNNN---N 445
Query: 401 YNCQNQISTGSNYHNEFNYSN 463
N I+ + +N Y+N
Sbjct: 446 INMNESINNNNTLNNNNEYNN 466
>sp|P35352|CAR3_DICDI Cyclic AMP receptor 3 (cAMP receptor 3)
Length = 490
Score = 39.7 bits (91), Expect = 0.013
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Frame = +2
Query: 305 VDMYQRYQ-NQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGLMFN 481
V+ QR + N+++ +G+++N NN N+N N + +N++N N +N + N
Sbjct: 294 VETQQRLEKNKNNNNHSPVGLSNNAQNNNHHHNHN-NNHNNNHNNHNNNNNNNNSDFVNN 352
Query: 482 DI-----------------NSQSLHGSHSWKN---AQSAFCDSPSDISHAALRSSGYNRS 601
D NS+S++G+ ++K +Q DSP+ S+ N +
Sbjct: 353 DSSNYYTASMIESFSVQNENSKSINGADNFKQNGASQQDDKDSPN--------SNNNNNN 404
Query: 602 HSMNENSAGIRNSDWNGYSSYTSPNDSHLSSFQEGNFNMMPM 727
++ N N+ N++ N ++Y N+ + N N +PM
Sbjct: 405 NNNNNNNNNNNNNNNNNNNNY---NNKDIEPIDNCNTNSIPM 443
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 39.7 bits (91), Expect = 0.013
Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 21/207 (10%)
Frame = +2
Query: 113 NQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIM 292
N +N N++GN I +T+T+ NNN + ++ +
Sbjct: 413 NNNNNNNNIIGNGK-ITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNN------ 465
Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGL 472
N+NN + N +S+ N+N NN N + N + +N ++ N +N +
Sbjct: 466 NNNNNNNNNNNNNSNSS-----NTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNI 520
Query: 473 MFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSH--SMNENSAGIR---- 634
N+ N+ + + + K D S S SSG N S S+ NS+ I+
Sbjct: 521 NNNNNNNNNNNNIYLTKKPSIGSTDESSTGSLGGNNSSGNNNSSSGSIGNNSSIIKQRSP 580
Query: 635 ---------------NSDWNGYSSYTS 670
N++ N YSSY S
Sbjct: 581 PHSINGPLMLPPSSTNNNNNIYSSYNS 607
>sp|Q03100|CYAA_DICDI Adenylate cyclase, aggregation specific (ATP pyrophosphate-lyase)
(Adenylyl cyclase)
Length = 1407
Score = 36.6 bits (83), Expect = 0.11
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Frame = +2
Query: 365 NHNQFNNQFPINYNCQNQISTGSNYHNEFNYSN------GGLMFNDINSQSLHGSHSWKN 526
N+N NN + NYN N + +N +NE+ S+ G + I+ + + K
Sbjct: 759 NNNYNNNNYNNNYNNNNLNNNSNNNNNEYGSSSSSSSVLGEAVTEQIDCNNTNPPLQHKK 818
Query: 527 AQSAFCDSPSDISHAALRSSG--YNRSHSMNENSAGIRNSDWNGYSSYTSPNDS 682
+QS ++ +DI +L S+ + + + N N+ N++ N + Y + N++
Sbjct: 819 SQSILTNNENDIVSPSLTSNSPILDTTVNNNNNNNNTNNNNKNQNNIYGNNNNN 872
>sp|P18494|GLN3_YEAST Nitrogen regulatory protein GLN3
Length = 730
Score = 36.2 bits (82), Expect = 0.15
Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 33/220 (15%)
Frame = +2
Query: 86 KPSPSETRLNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXN---NNCLG 256
KPSP+ Q N+NL+ +NN+ S A N N+
Sbjct: 506 KPSPNSANSQQFNMNMNLMNTTNNVSAGNSVASSPRIISSANFNSNSPLQQNLLSNSFQR 565
Query: 257 DPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSN 436
+ M N++ + Q Q+ +N N N N+N N +ST S
Sbjct: 566 QGMNIPRRKMSRNASYSSSFMAASLQQLHEQQQVDVNSNTNTNSNRQNWNSSNSVSTNSR 625
Query: 437 YHNEFNYSNGGLMFN--------------------------DINSQSLHGSHSWKNAQSA 538
N + +FN + S S +H + N S+
Sbjct: 626 SSNFVSQKPNFDIFNTPVDSPSVSRPSSRKSHTSLLSQQLQNSESNSFISNHKFNNRLSS 685
Query: 539 FCDSP----SDISHAALRSSGYNRSHSMNENSAGIRNSDW 646
SP +D+S S + S E+SA DW
Sbjct: 686 DSTSPIKYEADVSAGGKISEDNSTKGSSKESSAIADELDW 725
Score = 33.1 bits (74), Expect = 1.2
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 16/135 (11%)
Frame = +2
Query: 434 NYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMN 613
N +N N + GG FN + S L S S+ ++ + F + S+A L S+ R H+ N
Sbjct: 416 NTNNILNVNRGGYNFNSVPSPVLMNSQSYNSSNANF----NGASNANLNSNNLMR-HNSN 470
Query: 614 ENSAGIRNSDWNGYSSYTSPNDSHLSS----------------FQEGNFNMMPMRVPNVQ 745
+ R S +S + + S SS Q+ N NM M N
Sbjct: 471 TVTPNFRRSSRRSSTSSNTSSSSKSSSRSVVPILPKPSPNSANSQQFNMNMNLMNTTN-N 529
Query: 746 CTPANVSGNDPQLFS 790
+ N + P++ S
Sbjct: 530 VSAGNSVASSPRIIS 544
>sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2
Length = 798
Score = 35.8 bits (81), Expect = 0.19
Identities = 26/100 (26%), Positives = 41/100 (41%)
Frame = +2
Query: 239 NNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQ 418
NN S+T + N+NN + + N + + N+N NNQ N N
Sbjct: 108 NNQNRHGQSNTQNRSNQTNTNNQNRNTQNNNGSTTNQNRTSQNNNGGNNQNRGGQNRNNN 167
Query: 419 ISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSA 538
G N +N N++N N N + G H ++A+ A
Sbjct: 168 FGGGQNRNNRNNFNNQNR--NRFNKKGKKGKHQQESAKPA 205
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 35.8 bits (81), Expect = 0.19
Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 18/244 (7%)
Frame = +2
Query: 23 QQNSDFFNLN---SRAPGQPYIHDKP------SPSETRLNQQMSNLNLVGNSNNIIPSTS 175
+ SD+ N + S G P +P SPS + + + N L N+NN + +
Sbjct: 220 ENESDYNNTSFSDSNTDGTPKKRGRPPKAKGESPSASPTHNTLGNGILNSNNNNNNNNNN 279
Query: 176 TAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIMNSNNVDMYQRYQNQHSAPDLQ 355
+ + NNN ++ + N+NN N ++ +
Sbjct: 280 SNINNIN--------------NNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNT 325
Query: 356 MGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQS 535
N+N NN N N N + +N +N N SN N+ N Q+ + +++ N+ +
Sbjct: 326 NNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQNNNNNNTSNNSNT 385
Query: 536 AFCDSPSDISHAALRSSGYNRSHSMNE--------NSAGIRNSDWNGYSSYTS-PNDSHL 688
+ + G N ++S+N +G+ +SD N ++ S P+ ++
Sbjct: 386 TTATTTA--------PGGNNLTNSLNNAGNLGNLGRVSGLHSSDPNNPNAQKSFPDSTNT 437
Query: 689 SSFQ 700
FQ
Sbjct: 438 MDFQ 441
>sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48)
(YP 75) (Flocculent-specific protein)
Length = 430
Score = 35.4 bits (80), Expect = 0.25
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 5/145 (3%)
Frame = +2
Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNYSNGGL 472
+SNN D Y N G N+N +Y N S GSN ++ + +N
Sbjct: 73 DSNNNDSYGSNNND------SYGSNNND-------SYGSNNNDSYGSNNNDSYGSNNDDS 119
Query: 473 MFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRNSDWNG 652
+ +S +GS N ++ S ++ S+ + + Y S N +S G N D G
Sbjct: 120 YGSSNKKKSSYGS----NNDDSYGSSNNNDSYGSNNNDSYG---SNNNDSYGSNNDDSYG 172
Query: 653 YS-----SYTSPNDSHLSSFQEGNF 712
S SY S ND S + ++
Sbjct: 173 SSNKNKSSYGSNNDDSYGSNNDDSY 197
Score = 35.0 bits (79), Expect = 0.32
Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 6/210 (2%)
Frame = +2
Query: 83 DKPSPSETRLNQQMSNLNLVGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDP 262
D+ E+++ QQ SN ++ N +N + + NN+ G
Sbjct: 51 DRFDKMESKVRQQFSNTSINDNDSN---NNDSYGSNNNDSYGSNNNDSYGSNNNDSYGSN 107
Query: 263 SSTDIMTMIMNSNNVDMY----QRYQNQHSAPDLQMGMNHNQ--FNNQFPINYNCQNQIS 424
++ SNN D Y ++ + S D G ++N + + +Y N S
Sbjct: 108 NNDSY-----GSNNDDSYGSSNKKKSSYGSNNDDSYGSSNNNDSYGSNNNDSYGSNNNDS 162
Query: 425 TGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSH 604
GSN + + SN N+ +GS+ N S + S+ + + Y
Sbjct: 163 YGSNNDDSYGSSNKNKSSYGSNNDDSYGSN---NDDSYGSSNKKKSSYGSSNNDSYG--- 216
Query: 605 SMNENSAGIRNSDWNGYSSYTSPNDSHLSS 694
S N++S G N+D SY S ND S
Sbjct: 217 SNNDDSYGSNNND-----SYGSNNDDSYGS 241
Score = 34.7 bits (78), Expect = 0.42
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 14/147 (9%)
Frame = +2
Query: 296 SNNVDMYQRYQNQHSAPDLQMGMNHNQFNNQFPINYNCQNQISTGSNYHNEFNY--SNGG 469
SNN D Y + S+ ++ NN +Y N S GS+ N+ +Y S+
Sbjct: 233 SNNDDSYGSSNKKKSSYGSNNDDSYGSSNNN--DSYGSNNDDSYGSSNKNKSSYGSSSND 290
Query: 470 LMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSH-------SMNENSAG 628
+ N+ +GS N + + S +D S+ + Y S+ S N +S G
Sbjct: 291 DSYGSSNNDDSYGS---SNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKSSYGSSNNDSYG 347
Query: 629 IRNSDWNG-----YSSYTSPNDSHLSS 694
N D G SSY S ND S
Sbjct: 348 SNNDDSYGSSNKKKSSYGSNNDDSYGS 374
Score = 30.4 bits (67), Expect = 8.0
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Frame = +2
Query: 293 NSNNVDMYQRYQNQHSAPDLQMGMNHNQF---NNQFPINYNCQNQISTGSNYHNEFNYSN 463
+SNN D Y N G N+N NN + +N+ S GSN + + +N
Sbjct: 140 SSNNNDSYGSNNND------SYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNN 193
Query: 464 GGLMFNDINSQSLHGS---HSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIR 634
+ +S +GS S+ + S ++ S+ + Y S+ ++S G
Sbjct: 194 DDSYGSSNKKKSSYGSSNNDSYGSNNDDSYGSNNNDSYGSNNDDSYGSSNK-KKSSYGSN 252
Query: 635 NSDWNGYS----SYTSPNDSHLSS 694
N D G S SY S ND S
Sbjct: 253 NDDSYGSSNNNDSYGSNNDDSYGS 276
Score = 30.4 bits (67), Expect = 8.0
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Frame = +2
Query: 239 NNNCLGDPSSTDIMTMIMNSNNVDMY----QRYQNQHSAPDLQMGMNHNQF---NNQFPI 397
N + G S+ D +SNN D Y ++ + S D G N++ +N+
Sbjct: 280 NKSSYGSSSNDDSYG---SSNNDDSYGSSNKKKSSYGSNNDDSYGSNNDDSYGSSNKKKS 336
Query: 398 NYNCQNQISTGSNYHNEFNYSNGGLMFNDINSQSLHGSHSWKNAQSAFCDSPSDISHAAL 577
+Y N S GSN + + SN +S +GS N ++ S ++ S+ +
Sbjct: 337 SYGSSNNDSYGSNNDDSYGSSN--------KKKSSYGS----NNDDSYGSSNNNDSYGSN 384
Query: 578 RSSGYNRSHSMNENSAGIRN-SDWNGYSSYTSPN 676
Y S + N+NS G N N SY S N
Sbjct: 385 NDDSYG-SSNRNKNSYGSSNYGSSNNDDSYGSSN 417
>sp|Q7M3S9|RNGB_DICDI Ring finger protein B (Protein rngB)
Length = 943
Score = 35.4 bits (80), Expect = 0.25
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 1/185 (0%)
Frame = +2
Query: 140 VGNSNNIIPSTSTAVQXXXXXXXXXXXXXXXXXNNNCLGDPSSTDIMTMIMNSNNVDMYQ 319
+ NSN+I+ S +T++ + + SS+ + +
Sbjct: 336 ITNSNSIVGSPNTSISCGVSNSGASSSSGGGISGHPSILSSSSSSSYLSTSPLSTSSLAS 395
Query: 320 RYQNQHSAPDLQMGMNHNQFNNQFPINYNCQN-QISTGSNYHNEFNYSNGGLMFNDINSQ 496
YQ+ S LQ N NQ NN N N N Q +T + +N N +N N+ N+
Sbjct: 396 SYQSSQS---LQFNQNQNQNNNNNNNNNNNNNIQTTTTTTTNNNNNNNNN----NNNNNN 448
Query: 497 SLHGSHSWKNAQSAFCDSPSDISHAALRSSGYNRSHSMNENSAGIRNSDWNGYSSYTSPN 676
+ + + + Q SP + RS+ +S+N +S+ I ++ ++ T+
Sbjct: 449 NNNVESNQQQQQIQHQTSPMSV---LSRSNSNISLNSLNSSSSSILSTPSTLSTTTTTTT 505
Query: 677 DSHLS 691
SH S
Sbjct: 506 TSHAS 510
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,515,308
Number of Sequences: 369166
Number of extensions: 2203049
Number of successful extensions: 5416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5175
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10287619925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)