DrC_00639
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00639 (929 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromo... 128 2e-29 sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C recept... 89 2e-17 sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C rece... 88 3e-17 sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C rece... 85 3e-16 sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C rece... 83 1e-15 sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1 80 8e-15 sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C rece... 79 1e-14 sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C rece... 78 4e-14 sp|P38298|YPC1_YEAST Alkaline ceramidase YPC1 36 0.14 sp|P11531|DMD_MOUSE Dystrophin 33 0.88
>sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X Length = 507 Score = 128 bits (322), Expect = 2e-29 Identities = 80/288 (27%), Positives = 127/288 (44%), Gaps = 3/288 (1%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 RW +L ++ LN TN + WI YA + + + Y +LS+V+ + TI +G+ +W Sbjct: 45 RWIVLLAVALLNNTNTMSWIGYAPSGNYVNSFYGESSAA--WLSMVYMMCTIPVGMFAMW 102 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 +GLR ++ GW N + AV+R++ S +V + R+ I M GQ + +IA P MF P Sbjct: 103 AGREWGLRTAVLIAGWANGIGAVIRVISSLDFVPQDLRFPICMTGQGIAAIAYPFIMFLP 162 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG---XXXXXXXXXXXXEYTMFNXXXXXXXXXXXX 532 K+A WFP QRA+AT+IG M NP+G E+ ++ Sbjct: 163 TKVAGSWFPDTQRAIATSIGVMSNPLGVLMANLISPAIVKSPEHVIW-LNIFTCVPSLIA 221 Query: 533 XXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQLRRCLRNLSFLILSITFGMGLGLFTAL 712 T +P + F ++ C + ++IL I G G+G+F L Sbjct: 222 MLIATFGVNRSEPKIPPTFSASKP--QMDFVSGMKSCFSSKQYIILLIVMGGGIGMFNCL 279 Query: 713 STLFEQIFCPFGYPDTXXXXXXXXXXXXXXXXXXXXXXXXDRTKAFSE 856 T+ ++ CP GY + DRTK + E Sbjct: 280 YTVMLELLCPSGYSNFFSGVCAALMIVGGVFGAAASSIFVDRTKLYEE 327
>sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C receptor-related protein 2 (Calcium-chelate transporter) (CCT) Length = 546 Score = 89.0 bits (219), Expect = 2e-17 Identities = 46/147 (31%), Positives = 79/147 (53%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 RW ++ S + N WI Y S+++ + Y V I++LS+ + + I L LPV W Sbjct: 101 RWAVVLVFSCYSLCNAFQWIQYGSINNIFMNFYGVSAFAIDWLSMCYMLTYIPLLLPVAW 160 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 ++ FGLR I LN L A ++L + + + + M GQV+ S+AQ + P Sbjct: 161 MLEKFGLRTIAITGSALNCLGAWVKLGSLE-----PHLFPVTMVGQVICSVAQVFILGMP 215 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442 +++AS+WF +N+ + A ++ GN +G Sbjct: 216 SRIASVWFGANEVSTACSMAVFGNQLG 242
Score = 35.0 bits (79), Expect = 0.30
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 638 RCLRNLSFLILSITFGMGLGLFTALSTLFEQI 733
R +NL+F++L IT+G+ G F ALSTL ++
Sbjct: 320 RLFKNLNFVLLVITYGLNAGAFYALSTLLNRM 351
>sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C receptor-related protein 2 (Calcium-chelate transporter) (CCT) Length = 551 Score = 88.2 bits (217), Expect = 3e-17 Identities = 45/147 (30%), Positives = 79/147 (53%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 RW ++ S + N WI Y S+++ + Y V I++LS+ + + I L LPV W Sbjct: 107 RWVVVLVFSCYSLCNAFQWIQYGSINNIFMNFYGVSAFAIDWLSMCYMLTYIPLLLPVAW 166 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 ++ FGLR I LN L A ++L + + + + M GQV+ S+AQ + P Sbjct: 167 MLEKFGLRTIAITGSALNCLGAWVKLGSLE-----PHLFPVTMVGQVICSVAQVFILGMP 221 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442 +++AS+WF +++ + A ++ GN +G Sbjct: 222 SRIASVWFGADEVSTACSVAVFGNQLG 248
Score = 35.0 bits (79), Expect = 0.30
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 638 RCLRNLSFLILSITFGMGLGLFTALSTLFEQI 733
R +NL+F++L IT+G+ G F ALSTL ++
Sbjct: 326 RLFKNLNFVLLVITYGLNAGAFYALSTLLNRM 357
>sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C receptor-related protein 2 (Calcium-chelate transporter) (CCT) Length = 526 Score = 84.7 bits (208), Expect = 3e-16 Identities = 45/147 (30%), Positives = 80/147 (54%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 RW ++ S + N WI Y S+++ + Y V I++LS+ + + I L LPV W Sbjct: 84 RWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAW 143 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 ++ FGLR + LN L A ++L GS + + + + GQ++ S+AQ + P Sbjct: 144 LLEKFGLRTIALTGSALNCLGAWVKL-GS----LKPHLFPVTVVGQLICSVAQVFILGMP 198 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442 +++AS+WF +N+ + A ++ GN +G Sbjct: 199 SRIASVWFGANEVSTACSVAVFGNQLG 225
>sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C receptor-related protein 1 (Feline leukemia virus subgroup C receptor) (hFLVCR) Length = 555 Score = 82.8 bits (203), Expect = 1e-15 Identities = 60/261 (22%), Positives = 107/261 (40%), Gaps = 13/261 (4%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 R+ +L S + N WI Y+ +S+ Y V + I++LS+V+ + + L P W Sbjct: 107 RFVVLLIFSLYSLVNAFQWIQYSIISNVFEGFYGVTLLHIDWLSMVYMLAYVPLIFPATW 166 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 +D GLR T +L LN L A ++ ++ + + M GQ + S+AQ + P Sbjct: 167 LLDTRGLRLTALLGSGLNCLGAWIKCGSVQ-----QHLFWVTMLGQCLCSVAQVFILGLP 221 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVGXXXXXXXXXXXXE-------------YTMFNXX 502 +++AS+WF + + A +GN +G TMF Sbjct: 222 SRIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNDTNLLACNISTMFYGT 281 Query: 503 XXXXXXXXXXXXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQLRRCLRNLSFLILSITF 682 D P + ++ + +R +N+ F++L IT+ Sbjct: 282 SAVATLLFILTAIAFKEKPRYPPSQAQAALQDSPPEEYSYKKSIRNLFKNIPFVLLLITY 341 Query: 683 GMGLGLFTALSTLFEQIFCPF 745 G+ G F ++STL Q+ + Sbjct: 342 GIMTGAFYSVSTLLNQMILTY 362
>sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1 Length = 586 Score = 80.1 bits (196), Expect = 8e-15 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 11/255 (4%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 RW IL +L+ +NG WI Y+ +++ I Y V +++ S+++ + I+ +P W Sbjct: 150 RWVILVIFMFLSGSNGAQWIQYSIIANIISDYYKVSFQAVDWTSMIYMLTYILFFIPAAW 209 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 +D +GLR + +L N + A ++L+ + + + GQ + +Q + P Sbjct: 210 LLDKWGLRLSVLLGALGNCVGAWIKLLSTH-----PDSFWVTFVGQTIVGASQMFTLGIP 264 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG-----XXXXXXXXXXXXEYTMF--NXXXXXXXX 520 +LA++WF ++ + A +G GN +G E+ + N Sbjct: 265 PRLAAVWFGPDEVSRACALGVFGNQLGIAVGFVLPPLIVSNGSVEHVTYDLNTLFLGSAV 324 Query: 521 XXXXXXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQ----LRRCLRNLSFLILSITFGM 688 + L+ TF LR+ + + F+IL IT+G+ Sbjct: 325 LNTSILALVICFFTARPAVPPSLAQVNALEEKTFDNNFWGTLRKLMTSRDFVILFITYGI 384 Query: 689 GLGLFTALSTLFEQI 733 G+F A+STL Q+ Sbjct: 385 NTGVFYAISTLLSQM 399
>sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C receptor-related protein 1 Length = 560 Score = 79.3 bits (194), Expect = 1e-14 Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 13/261 (4%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 R+ +L S + N WI Y+ +S+ Y V I++LS+V+ + + L P W Sbjct: 107 RFVVLLIFSLYSLVNAFQWIQYSVISNVFEGFYGVSSLHIDWLSMVYMLAYVPLIFPATW 166 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 +D GLR T +L LN L A ++ ++ + + M GQ + S+AQ + P Sbjct: 167 LLDTRGLRLTALLGSGLNCLGAWVKCASVQ-----QHLFWVTMLGQCLCSVAQVFILGLP 221 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVGXXXXXXXXXXXXE-------------YTMFNXX 502 +++AS+WF + + A +GN +G TMF Sbjct: 222 SRIASVWFGPKEVSTACATAVLGNQLGAAIGFLLPPVLVPNTQNNTDLLACNISTMFYGT 281 Query: 503 XXXXXXXXXXXXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQLRRCLRNLSFLILSITF 682 + P ++ + +R RN+ F++L IT+ Sbjct: 282 SSVATFLCFLTIIAFKEKPQYPPSQAQAALQNSPPAKYSYKKSIRNLFRNVPFVLLLITY 341 Query: 683 GMGLGLFTALSTLFEQIFCPF 745 G+ G F ++STL Q+ + Sbjct: 342 GIITGAFYSVSTLLNQMILTY 362
>sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C receptor-related protein 1 Length = 560 Score = 77.8 bits (190), Expect = 4e-14 Identities = 47/147 (31%), Positives = 76/147 (51%) Frame = +2 Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181 R+ +L S + N WI Y+S+S+ Y+V IN+LS+V+ V + L P W Sbjct: 100 RFVVLLIFSLYSLVNAFQWIQYSSISNVFEDFYEVSPLHINWLSMVYMVAYVPLIFPATW 159 Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361 +D GLR T +L LN L A ++ GS + + + M GQ++ S+AQ + P Sbjct: 160 LLDTRGLRLTALLGSGLNCLGAWVK-CGS----VQRHLFWVTMLGQILCSVAQVFILGLP 214 Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442 + +AS+WF + + A +GN +G Sbjct: 215 SPVASVWFGPKEVSTACATAVLGNQLG 241
>sp|P38298|YPC1_YEAST Alkaline ceramidase YPC1 Length = 316 Score = 36.2 bits (82), Expect = 0.14 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Frame = +1 Query: 586 HFCRPPTRWRHISRAIAEMPAQSLI-PHSLHHIRDGIGIVHRSVDLV*ADLLSIWISRHF 762 H+C + W H+ R+I +P L+ PH HI G+GI V L ++++ +S ++ Sbjct: 217 HYC---SFWVHVRRSILALPLGVLLEPHGWWHILTGMGIYFYIVSLEHLRVITLNVSCNY 273 Query: 763 CWHLRWS--SDRVWTG 804 + RW + +W G Sbjct: 274 QFIWRWKVFPELIWKG 289
>sp|P11531|DMD_MOUSE Dystrophin Length = 3678 Score = 33.5 bits (75), Expect = 0.88 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Frame = -2 Query: 448 QDANRIAHR-----TNRGRQGALIRREPERG*FGRTEHCQWLSDRSNYLPSHRYFVSVLG 284 QDA+R A N G IR+ E+ TE CQ LS+R N+L Y ++ Sbjct: 780 QDASRSAQALVEQMANEGVNAESIRQASEQLNSRWTEFCQLLSERVNWL---EYQTNI-- 834 Query: 283 SHIEIAAYESEHRRQQIQPTAENAGCSQSEVINAP 179 I Y + +Q+ TAEN +QS ++ P Sbjct: 835 ----ITFYNQLQQLEQMTTTAENLLKTQSTTLSEP 865
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,918,127
Number of Sequences: 369166
Number of extensions: 2171943
Number of successful extensions: 7267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7252
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
