Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_O15
(773 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromo... 133 6e-31
sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C recept... 89 1e-17
sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C rece... 88 2e-17
sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C rece... 85 2e-16
sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C rece... 83 9e-16
sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1 80 6e-15
sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C rece... 79 1e-14
sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C rece... 78 3e-14
sp|P11531|DMD_MOUSE Dystrophin 33 0.66
sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I 135 kDa ... 33 0.86
>sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X
Length = 507
Score = 133 bits (334), Expect = 6e-31
Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 3/260 (1%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
RW +L ++ LN TN + WI YA + + + Y +LS+V+ + TI +G+ +W
Sbjct: 45 RWIVLLAVALLNNTNTMSWIGYAPSGNYVNSFYGESSAA--WLSMVYMMCTIPVGMFAMW 102
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
+GLR ++ GW N + AV+R++ S +V + R+ I M GQ + +IA P MF P
Sbjct: 103 AGREWGLRTAVLIAGWANGIGAVIRVISSLDFVPQDLRFPICMTGQGIAAIAYPFIMFLP 162
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG---XXXXXXXXXXXXEYTMFNXXXXXXXXXXXX 532
K+A WFP QRA+AT+IG M NP+G E+ ++
Sbjct: 163 TKVAGSWFPDTQRAIATSIGVMSNPLGVLMANLISPAIVKSPEHVIW-LNIFTCVPSLIA 221
Query: 533 XXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQLRRCLRNLSFLILSITFGMGLGLFTAL 712
T +P + F ++ C + ++IL I G G+G+F L
Sbjct: 222 MLIATFGVNRSEPKIPPTFSASKP--QMDFVSGMKSCFSSKQYIILLIVMGGGIGMFNCL 279
Query: 713 STLFEQIFCPFGYPDTFAGI 772
T+ ++ CP GY + F+G+
Sbjct: 280 YTVMLELLCPSGYSNFFSGV 299
>sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 546
Score = 89.0 bits (219), Expect = 1e-17
Identities = 46/147 (31%), Positives = 79/147 (53%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
RW ++ S + N WI Y S+++ + Y V I++LS+ + + I L LPV W
Sbjct: 101 RWAVVLVFSCYSLCNAFQWIQYGSINNIFMNFYGVSAFAIDWLSMCYMLTYIPLLLPVAW 160
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
++ FGLR I LN L A ++L + + + + M GQV+ S+AQ + P
Sbjct: 161 MLEKFGLRTIAITGSALNCLGAWVKLGSLE-----PHLFPVTMVGQVICSVAQVFILGMP 215
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442
+++AS+WF +N+ + A ++ GN +G
Sbjct: 216 SRIASVWFGANEVSTACSMAVFGNQLG 242
Score = 35.0 bits (79), Expect = 0.23
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 638 RCLRNLSFLILSITFGMGLGLFTALSTLFEQI 733
R +NL+F++L IT+G+ G F ALSTL ++
Sbjct: 320 RLFKNLNFVLLVITYGLNAGAFYALSTLLNRM 351
>sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 551
Score = 88.2 bits (217), Expect = 2e-17
Identities = 45/147 (30%), Positives = 79/147 (53%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
RW ++ S + N WI Y S+++ + Y V I++LS+ + + I L LPV W
Sbjct: 107 RWVVVLVFSCYSLCNAFQWIQYGSINNIFMNFYGVSAFAIDWLSMCYMLTYIPLLLPVAW 166
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
++ FGLR I LN L A ++L + + + + M GQV+ S+AQ + P
Sbjct: 167 MLEKFGLRTIAITGSALNCLGAWVKLGSLE-----PHLFPVTMVGQVICSVAQVFILGMP 221
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442
+++AS+WF +++ + A ++ GN +G
Sbjct: 222 SRIASVWFGADEVSTACSVAVFGNQLG 248
Score = 35.0 bits (79), Expect = 0.23
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 638 RCLRNLSFLILSITFGMGLGLFTALSTLFEQI 733
R +NL+F++L IT+G+ G F ALSTL ++
Sbjct: 326 RLFKNLNFVLLVITYGLNAGAFYALSTLLNRM 357
>sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 526
Score = 84.7 bits (208), Expect = 2e-16
Identities = 45/147 (30%), Positives = 80/147 (54%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
RW ++ S + N WI Y S+++ + Y V I++LS+ + + I L LPV W
Sbjct: 84 RWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAW 143
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
++ FGLR + LN L A ++L GS + + + + GQ++ S+AQ + P
Sbjct: 144 LLEKFGLRTIALTGSALNCLGAWVKL-GS----LKPHLFPVTVVGQLICSVAQVFILGMP 198
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442
+++AS+WF +N+ + A ++ GN +G
Sbjct: 199 SRIASVWFGANEVSTACSVAVFGNQLG 225
>sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C receptor-related protein 1 (Feline
leukemia virus subgroup C receptor) (hFLVCR)
Length = 555
Score = 82.8 bits (203), Expect = 9e-16
Identities = 60/261 (22%), Positives = 107/261 (40%), Gaps = 13/261 (4%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
R+ +L S + N WI Y+ +S+ Y V + I++LS+V+ + + L P W
Sbjct: 107 RFVVLLIFSLYSLVNAFQWIQYSIISNVFEGFYGVTLLHIDWLSMVYMLAYVPLIFPATW 166
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
+D GLR T +L LN L A ++ ++ + + M GQ + S+AQ + P
Sbjct: 167 LLDTRGLRLTALLGSGLNCLGAWIKCGSVQ-----QHLFWVTMLGQCLCSVAQVFILGLP 221
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVGXXXXXXXXXXXXE-------------YTMFNXX 502
+++AS+WF + + A +GN +G TMF
Sbjct: 222 SRIASVWFGPKEVSTACATAVLGNQLGTAVGFLLPPVLVPNTQNDTNLLACNISTMFYGT 281
Query: 503 XXXXXXXXXXXXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQLRRCLRNLSFLILSITF 682
D P + ++ + +R +N+ F++L IT+
Sbjct: 282 SAVATLLFILTAIAFKEKPRYPPSQAQAALQDSPPEEYSYKKSIRNLFKNIPFVLLLITY 341
Query: 683 GMGLGLFTALSTLFEQIFCPF 745
G+ G F ++STL Q+ +
Sbjct: 342 GIMTGAFYSVSTLLNQMILTY 362
>sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1
Length = 586
Score = 80.1 bits (196), Expect = 6e-15
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 11/255 (4%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
RW IL +L+ +NG WI Y+ +++ I Y V +++ S+++ + I+ +P W
Sbjct: 150 RWVILVIFMFLSGSNGAQWIQYSIIANIISDYYKVSFQAVDWTSMIYMLTYILFFIPAAW 209
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
+D +GLR + +L N + A ++L+ + + + GQ + +Q + P
Sbjct: 210 LLDKWGLRLSVLLGALGNCVGAWIKLLSTH-----PDSFWVTFVGQTIVGASQMFTLGIP 264
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG-----XXXXXXXXXXXXEYTMF--NXXXXXXXX 520
+LA++WF ++ + A +G GN +G E+ + N
Sbjct: 265 PRLAAVWFGPDEVSRACALGVFGNQLGIAVGFVLPPLIVSNGSVEHVTYDLNTLFLGSAV 324
Query: 521 XXXXXXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQ----LRRCLRNLSFLILSITFGM 688
+ L+ TF LR+ + + F+IL IT+G+
Sbjct: 325 LNTSILALVICFFTARPAVPPSLAQVNALEEKTFDNNFWGTLRKLMTSRDFVILFITYGI 384
Query: 689 GLGLFTALSTLFEQI 733
G+F A+STL Q+
Sbjct: 385 NTGVFYAISTLLSQM 399
>sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C receptor-related protein 1
Length = 560
Score = 79.3 bits (194), Expect = 1e-14
Identities = 60/261 (22%), Positives = 105/261 (40%), Gaps = 13/261 (4%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
R+ +L S + N WI Y+ +S+ Y V I++LS+V+ + + L P W
Sbjct: 107 RFVVLLIFSLYSLVNAFQWIQYSVISNVFEGFYGVSSLHIDWLSMVYMLAYVPLIFPATW 166
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
+D GLR T +L LN L A ++ ++ + + M GQ + S+AQ + P
Sbjct: 167 LLDTRGLRLTALLGSGLNCLGAWVKCASVQ-----QHLFWVTMLGQCLCSVAQVFILGLP 221
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVGXXXXXXXXXXXXE-------------YTMFNXX 502
+++AS+WF + + A +GN +G TMF
Sbjct: 222 SRIASVWFGPKEVSTACATAVLGNQLGAAIGFLLPPVLVPNTQNNTDLLACNISTMFYGT 281
Query: 503 XXXXXXXXXXXXXPTLXXXXXXXXXXXXXXXDRPLDGVTFPEQLRRCLRNLSFLILSITF 682
+ P ++ + +R RN+ F++L IT+
Sbjct: 282 SSVATFLCFLTIIAFKEKPQYPPSQAQAALQNSPPAKYSYKKSIRNLFRNVPFVLLLITY 341
Query: 683 GMGLGLFTALSTLFEQIFCPF 745
G+ G F ++STL Q+ +
Sbjct: 342 GIITGAFYSVSTLLNQMILTY 362
>sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C receptor-related protein 1
Length = 560
Score = 77.8 bits (190), Expect = 3e-14
Identities = 47/147 (31%), Positives = 76/147 (51%)
Frame = +2
Query: 2 RWFILFTLSWLNFTNGILWISYASVSDQILTLYDVQIDLINYLSLVFPVITIVLGLPVIW 181
R+ +L S + N WI Y+S+S+ Y+V IN+LS+V+ V + L P W
Sbjct: 100 RFVVLLIFSLYSLVNAFQWIQYSSISNVFEDFYEVSPLHINWLSMVYMVAYVPLIFPATW 159
Query: 182 GIDHFGLRATCILCGWLNLLSAVLRLVGSDFYVRTEYRYKIAMAGQVVGSIAQPLAMFSP 361
+D GLR T +L LN L A ++ GS + + + M GQ++ S+AQ + P
Sbjct: 160 LLDTRGLRLTALLGSGLNCLGAWVK-CGS----VQRHLFWVTMLGQILCSVAQVFILGLP 214
Query: 362 AKLASLWFPSNQRALATTIGAMGNPVG 442
+ +AS+WF + + A +GN +G
Sbjct: 215 SPVASVWFGPKEVSTACATAVLGNQLG 241
>sp|P11531|DMD_MOUSE Dystrophin
Length = 3678
Score = 33.5 bits (75), Expect = 0.66
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = -2
Query: 448 QDANRIAHR-----TNRGRQGALIRREPERG*FGRTEHCQWLSDRSNYLPSHRYFVSVLG 284
QDA+R A N G IR+ E+ TE CQ LS+R N+L Y ++
Sbjct: 780 QDASRSAQALVEQMANEGVNAESIRQASEQLNSRWTEFCQLLSERVNWL---EYQTNI-- 834
Query: 283 SHIEIAAYESEHRRQQIQPTAENAGCSQSEVINAP 179
I Y + +Q+ TAEN +QS ++ P
Sbjct: 835 ----ITFYNQLQQLEQMTTTAENLLKTQSTTLSEP 865
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I 135 kDa polypeptide (A135) (RNA
polymerase I subunit 2)
Length = 1203
Score = 33.1 bits (74), Expect = 0.86
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 162 SVCQ*FGALITSDCEQPAFSAVG*ICCRRCS 254
SVC+ G+++T+ P ++ +CCRRCS
Sbjct: 1102 SVCRECGSILTTQQSVPRIGSISTVCCRRCS 1132
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,918,016
Number of Sequences: 369166
Number of extensions: 1681841
Number of successful extensions: 4887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4880
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)