Planarian EST Database

DrC_00636

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00636 TTTGGGAAGGGGACAATGAAATACCTCAAGAAGTTCATGAAGTGGTAATACCACATTTAG GCCATATGCCTATCTGTAAGGGGGATTATCATTATTTACCTAAGGCCGTTCAAGGGTTTA TTGCTAAATGGGCACTTATTTGTAAACCAAGAGCCCTTTACATTTGCGATGGGGGTGAAG ATGAAGCAAATGAAATTATAACGAAATTGAAAGAAAGAGGCACTCTTCACGCTCTAACAA AATTAGAAAATTGTTATATTTGTCGAACGGATCCCGATGACGTTGCAAGAGTAGAATCGA AAACATTTATTTCGACGAAAGATAAACATATGACAGTTCCTCATGTTAAGGAAGGTTCAA CAGGTATACTAGGTCAATGGATGGCGCCAGAAGCACTAAGTGACGAGGTTGCCTACGTTT AAGAGGTGCATGTGTGGAGATGATGTACATCATTCCATTCAGCATGGTCCCATGATCACC TCTGAGTAGATGCATACACCATCGATAGTATACGTGTGCTGTCTATGAGAGTATGACTCG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00636
         (540 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29190|PPCK_HAECO  Phosphoenolpyruvate carboxykinase [GTP...   140   3e-33
sp|Q05893|PPCK_ASCSU  Phosphoenolpyruvate carboxykinase [GTP...   126   4e-29
sp|Q8BH04|PPCKM_MOUSE  Phosphoenolpyruvate carboxykinase, mi...   104   1e-22
sp|P20007|PPCK_DROME  Phosphoenolpyruvate carboxykinase [GTP...   100   2e-21
sp|Q16822|PPCKM_HUMAN  Phosphoenolpyruvate carboxykinase, mi...    98   1e-20
sp|Q8HYZ4|PPCKC_BOVIN  Phosphoenolpyruvate carboxykinase, cy...    97   2e-20
sp|P21642|PPCKM_CHICK  Phosphoenolpyruvate carboxykinase, mi...    96   4e-20
sp|P05153|PPCKC_CHICK  Phosphoenolpyruvate carboxykinase, cy...    96   6e-20
sp|Q9Z2V4|PPCKC_MOUSE  Phosphoenolpyruvate carboxykinase, cy...    94   2e-19
sp|P35558|PPCKC_HUMAN  Phosphoenolpyruvate carboxykinase, cy...    93   5e-19

>sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
           carboxylase) (PEPCK)
          Length = 619

 Score =  140 bits (352), Expect = 3e-33
 Identities = 67/118 (56%), Positives = 86/118 (72%)
 Frame = +3

Query: 57  LGHMPICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHAL 236
           LGH+PI KGD+H LP  VQ F+A+ A + +PR +YICDG + EA+EII KL ERG L  L
Sbjct: 4   LGHVPIHKGDFHLLPPKVQRFVAEKAELMRPRGIYICDGSQHEADEIIDKLIERGMLSPL 63

Query: 237 TKLENCYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPEALSDEV 410
              EN YICRTDP DVARVESKT++ T DK+ TV H  +G   I+G WM+P++L+ E+
Sbjct: 64  KAYENNYICRTDPKDVARVESKTWMVTPDKYQTVCHTPDGIEPIMGHWMSPDSLATEL 121

>sp|Q05893|PPCK_ASCSU Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
           carboxylase) (PEPCK)
          Length = 643

 Score =  126 bits (316), Expect = 4e-29
 Identities = 61/126 (48%), Positives = 86/126 (68%)
 Frame = +3

Query: 33  VHEVVIPHLGHMPICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLK 212
           V EVV     H+P+ KGD+  LPK VQ F+A+ A + KP A++ICDG ++EA+E+I +  
Sbjct: 17  VSEVVTHKQNHIPVIKGDFVSLPKHVQRFVAEKAELMKPSAIFICDGSQNEADELIARCV 76

Query: 213 ERGTLHALTKLENCYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPE 392
           ERG L  L   +N Y+CRTDP DVARVESKT++ T +K+ +V H  EG   ++GQWM+P+
Sbjct: 77  ERGVLVPLKAYKNNYLCRTDPRDVARVESKTWMITPEKYDSVCHTPEGVKPMMGQWMSPD 136

Query: 393 ALSDEV 410
               E+
Sbjct: 137 EFGKEL 142

>sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
           (Phosphoenolpyruvate carboxylase) (PEPCK-M)
          Length = 640

 Score =  104 bits (260), Expect = 1e-22
 Identities = 49/107 (45%), Positives = 69/107 (64%)
 Frame = +3

Query: 72  ICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHALTKLEN 251
           +  GD   LP  V+ F+A+ A +C+P  ++ICDG E E   I+  L+E+G +  L K +N
Sbjct: 32  VLSGDMSQLPAGVRDFVARSAHLCQPEGIHICDGTEAENTAILALLEEQGLIRKLPKYKN 91

Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPE 392
           C++ RTDP DVARVESKT I T  +  TVP +  G+ G LG WM+P+
Sbjct: 92  CWLARTDPKDVARVESKTVIVTPSQRDTVPLLAGGARGQLGNWMSPD 138

>sp|P20007|PPCK_DROME Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
           carboxylase) (PEPCK)
          Length = 647

 Score =  100 bits (250), Expect = 2e-21
 Identities = 48/119 (40%), Positives = 71/119 (59%)
 Frame = +3

Query: 54  HLGHMPICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHA 233
           H+  +PI  G+   L   V+ F+ +   +C+P  ++ICDG E E   +I  L E GT+  
Sbjct: 34  HIRGIPISYGNVDLLTTGVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVP 93

Query: 234 LTKLENCYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPEALSDEV 410
           L K +NC++ RT+P DVARVES+TFI T+ +  T+P   EG  G LG W++P  +   V
Sbjct: 94  LPKYDNCWLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDAAV 152

>sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
           (Phosphoenolpyruvate carboxylase) (PEPCK-M)
          Length = 640

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 46/106 (43%), Positives = 64/106 (60%)
 Frame = +3

Query: 72  ICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHALTKLEN 251
           +  GD   LP  ++ F+   A +C+P  ++ICDG E E    +T L+++G +  L K  N
Sbjct: 32  VLSGDLGQLPTGIRDFVEHSARLCQPEGIHICDGTEAENTATLTLLEQQGLIRKLPKYNN 91

Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAP 389
           C++ RTDP DVARVESKT I T  +  TVP    G+ G LG WM+P
Sbjct: 92  CWLARTDPKDVARVESKTVIVTPSQRDTVPLPPGGARGQLGNWMSP 137

>sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
           (Phosphoenolpyruvate carboxylase) (PEPCK-C)
          Length = 622

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 45/107 (42%), Positives = 71/107 (66%)
 Frame = +3

Query: 72  ICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHALTKLEN 251
           I +G    LP+AV+ F+   A +C+P  ++ICDG E+E  ++++ ++E G +  L K +N
Sbjct: 15  IVRGSLDSLPQAVRSFVESSAKLCRPDQVHICDGSEEENRQLLSHMEEEGVIKRLKKYDN 74

Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPE 392
           C++  TDP DVAR+ESKT I T+++  TVP  K G +  LG+WM+ E
Sbjct: 75  CWLALTDPRDVARIESKTVIITREQRDTVPIPKNGLSQ-LGRWMSEE 120

>sp|P21642|PPCKM_CHICK Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
           (Phosphoenolpyruvate carboxylase) (PEPCK-M)
          Length = 640

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 44/105 (41%), Positives = 64/105 (60%)
 Frame = +3

Query: 96  LPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHALTKLENCYICRTDP 275
           LP A + F+ +   +C+PR + +CDG E+E  E++  L++ G LH L K +NC++ RTDP
Sbjct: 41  LPAAARDFVEEAVRLCRpreVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDP 100

Query: 276 DDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPEALSDEV 410
            DVARVESKT + T ++   VP      +  LG WM+P A    V
Sbjct: 101 RDVARVESKTVLVTPEQSDAVPPPPPSGSPQLGNWMSPNAFQAAV 145

>sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
           (Phosphoenolpyruvate carboxylase) (PEPCK-C)
          Length = 622

 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 46/107 (42%), Positives = 72/107 (67%)
 Frame = +3

Query: 72  ICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHALTKLEN 251
           + +GD   LP  V+ FI   A +C+P +++ICDG E+E  +I+  + E+G +  L+K EN
Sbjct: 15  VIQGDLESLPPQVREFIESNAKLCQPESIHICDGSEEENKKILDIMVEQGMIKKLSKYEN 74

Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPE 392
           C++  T+P DVAR+ESKT I T+++  T+P  K GS+  LG+WM+ E
Sbjct: 75  CWLALTNPRDVARIESKTVIITQEQRDTIPIPKTGSSQ-LGRWMSEE 120

>sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
           (Phosphoenolpyruvate carboxylase) (PEPCK-C)
          Length = 622

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 44/107 (41%), Positives = 70/107 (65%)
 Frame = +3

Query: 72  ICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHALTKLEN 251
           + +G    LP+AV+ F+   A +C+P  ++ICDG E+E  +++  ++E G +  L K +N
Sbjct: 15  VIQGSLDSLPQAVRKFVEGNAQLCQPEYIHICDGSEEEYGQLLAHMQEEGVIRKLKKYDN 74

Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPE 392
           C++  TDP DVAR+ESKT I T+++  TVP  K G +  LG+WM+ E
Sbjct: 75  CWLALTDPRDVARIESKTVIITQEQRDTVPIPKTGLSQ-LGRWMSEE 120

>sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
           (Phosphoenolpyruvate carboxylase) (PEPCK-C)
          Length = 622

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 45/107 (42%), Positives = 70/107 (65%)
 Frame = +3

Query: 72  ICKGDYHYLPKAVQGFIAKWALICKPRALYICDGGEDEANEIITKLKERGTLHALTKLEN 251
           + +G    LP+AV+ F+   A +C+P  ++ICDG E+E   ++ +++E G L  L K +N
Sbjct: 15  VVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDN 74

Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTGILGQWMAPE 392
           C++  TDP DVAR+ESKT I T+++  TVP  K G +  LG+WM+ E
Sbjct: 75  CWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLSQ-LGRWMSEE 120

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,508,469
Number of Sequences: 369166
Number of extensions: 1310798
Number of successful extensions: 2899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2879
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00636

Planaria EST Database

DrC_00636

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail