Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_N24
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP... 114 7e-26
sp|Q05893|PPCK_ASCSU Phosphoenolpyruvate carboxykinase [GTP... 107 7e-24
sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mi... 92 4e-19
sp|P20007|PPCK_DROME Phosphoenolpyruvate carboxykinase [GTP... 89 3e-18
sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cy... 89 3e-18
sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cy... 89 4e-18
sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cy... 87 1e-17
sp|P21642|PPCKM_CHICK Phosphoenolpyruvate carboxykinase, mi... 86 3e-17
sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cy... 86 3e-17
sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mi... 86 3e-17
>sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 619
Score = 114 bits (285), Expect = 7e-26
Identities = 57/100 (57%), Positives = 71/100 (71%)
Frame = +3
Query: 57 LGHMPICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHAL 236
LGH+PI +GD+ LP V+ F+A+ A + +PR +YICDG + EA EII KL ERG L L
Sbjct: 4 LGHVPIHKGDFHLLPPKVQRFVAEKAELMRPRGIYICDGSQHEADEIIDKLIERGMLSPL 63
Query: 237 TKLENCYICRTDPDDVARVESKTFISTKDKHMTVPHVKEG 356
EN YICRTDP DVARVESKT++ T DK+ TV H +G
Sbjct: 64 KAYENNYICRTDPKDVARVESKTWMVTPDKYQTVCHTPDG 103
>sp|Q05893|PPCK_ASCSU Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 643
Score = 107 bits (268), Expect = 7e-24
Identities = 53/108 (49%), Positives = 75/108 (69%)
Frame = +3
Query: 33 VHEVVIPHLGHMPICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLR 212
V EVV H+P+ +GD++ LPK V+ F+A+ A + KP A++ICDG ++EA E+I +
Sbjct: 17 VSEVVTHKQNHIPVIKGDFVSLPKHVQRFVAEKAELMKPSAIFICDGSQNEADELIARCV 76
Query: 213 ERGTLHALTKLENCYICRTDPDDVARVESKTFISTKDKHMTVPHVKEG 356
ERG L L +N Y+CRTDP DVARVESKT++ T +K+ +V H EG
Sbjct: 77 ERGVLVPLKAYKNNYLCRTDPRDVARVESKTWMITPEKYDSVCHTPEG 124
>sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 92.0 bits (227), Expect = 4e-19
Identities = 45/98 (45%), Positives = 61/98 (62%)
Frame = +3
Query: 72 ICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHALTKLEN 251
+ GD LP VR F+A+ A +C+P ++ICDG E E I+ L E+G + L K +N
Sbjct: 32 VLSGDMSQLPAGVRDFVARSAHLCQPEGIHICDGTEAENTAILALLEEQGLIRKLPKYKN 91
Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTG 365
C++ RTDP DVARVESKT I T + TVP + G+ G
Sbjct: 92 CWLARTDPKDVARVESKTVIVTPSQRDTVPLLAGGARG 129
>sp|P20007|PPCK_DROME Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 647
Score = 89.0 bits (219), Expect = 3e-18
Identities = 44/104 (42%), Positives = 63/104 (60%)
Frame = +3
Query: 54 HLGHMPICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHA 233
H+ +PI G+ L VR F+ + +C+P ++ICDG E E +I L E GT+
Sbjct: 34 HIRGIPISYGNVDLLTTGVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVP 93
Query: 234 LTKLENCYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTG 365
L K +NC++ RT+P DVARVES+TFI T+ + T+P EG G
Sbjct: 94 LPKYDNCWLARTNPADVARVESRTFICTERREETIPTPVEGVKG 137
>sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 89.0 bits (219), Expect = 3e-18
Identities = 41/95 (43%), Positives = 61/95 (64%)
Frame = +3
Query: 72 ICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHALTKLEN 251
I G LP+AVR F+ A +C+P ++ICDG E+E ++++ + E G + L K +N
Sbjct: 15 IVRGSLDSLPQAVRSFVESSAKLCRPDQVHICDGSEEENRQLLSHMEEEGVIKRLKKYDN 74
Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEG 356
C++ TDP DVAR+ESKT I T+++ TVP K G
Sbjct: 75 CWLALTDPRDVARIESKTVIITREQRDTVPIPKNG 109
>sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 88.6 bits (218), Expect = 4e-18
Identities = 42/97 (43%), Positives = 65/97 (67%)
Frame = +3
Query: 72 ICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHALTKLEN 251
+ +GD LP VR FI A +C+P +++ICDG E+E +I+ + E+G + L+K EN
Sbjct: 15 VIQGDLESLPPQVREFIESNAKLCQPESIHICDGSEEENKKILDIMVEQGMIKKLSKYEN 74
Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGST 362
C++ T+P DVAR+ESKT I T+++ T+P K GS+
Sbjct: 75 CWLALTNPRDVARIESKTVIITQEQRDTIPIPKTGSS 111
>sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 87.0 bits (214), Expect = 1e-17
Identities = 40/95 (42%), Positives = 62/95 (65%)
Frame = +3
Query: 72 ICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHALTKLEN 251
+ +G LP+AVR F+ A +C+P ++ICDG E+E +++ ++E G + L K +N
Sbjct: 15 VIQGSLDSLPQAVRKFVEGNAQLCQPEYIHICDGSEEEYGQLLAHMQEEGVIRKLKKYDN 74
Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEG 356
C++ TDP DVAR+ESKT I T+++ TVP K G
Sbjct: 75 CWLALTDPRDVARIESKTVIITQEQRDTVPIPKTG 109
>sp|P21642|PPCKM_CHICK Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 85.9 bits (211), Expect = 3e-17
Identities = 38/82 (46%), Positives = 55/82 (67%)
Frame = +3
Query: 96 LPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHALTKLENCYICRTDP 275
LP A R F+ + +C+PR + +CDG E+E E++ L++ G LH L K +NC++ RTDP
Sbjct: 41 LPAAARDFVEEAVRLCRpreVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDP 100
Query: 276 DDVARVESKTFISTKDKHMTVP 341
DVARVESKT + T ++ VP
Sbjct: 101 RDVARVESKTVLVTPEQSDAVP 122
>sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 85.5 bits (210), Expect = 3e-17
Identities = 41/95 (43%), Positives = 61/95 (64%)
Frame = +3
Query: 72 ICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHALTKLEN 251
+ +G LP+AVR F+ A +C+P ++ICDG E+E ++ ++ E G L L K +N
Sbjct: 15 VVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDN 74
Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEG 356
C++ TDP DVAR+ESKT I T+++ TVP K G
Sbjct: 75 CWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTG 109
>sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 85.5 bits (210), Expect = 3e-17
Identities = 42/98 (42%), Positives = 57/98 (58%)
Frame = +3
Query: 72 ICEGDYLYLPKAVRGFIAKWALICKPRALYICDGGEDEAYEIITKLRERGTLHALTKLEN 251
+ GD LP +R F+ A +C+P ++ICDG E E +T L ++G + L K N
Sbjct: 32 VLSGDLGQLPTGIRDFVEHSARLCQPEGIHICDGTEAENTATLTLLEQQGLIRKLPKYNN 91
Query: 252 CYICRTDPDDVARVESKTFISTKDKHMTVPHVKEGSTG 365
C++ RTDP DVARVESKT I T + TVP G+ G
Sbjct: 92 CWLARTDPKDVARVESKTVIVTPSQRDTVPLPPGGARG 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,260,528
Number of Sequences: 369166
Number of extensions: 867390
Number of successful extensions: 1958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1940
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)