Planaria EST Database

DrC_00630

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00630
         (612 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53992|SC24C_HUMAN  Protein transport protein Sec24C (SEC...   128   1e-29
sp|O94855|SC24D_HUMAN  Protein transport protein Sec24D (SEC...    99   7e-21
sp|Q9M291|SC24C_ARATH  Protein transport protein Sec24-like CEF    83   5e-16
sp|O95486|SC24A_HUMAN  Protein transport protein Sec24A (SEC...    60   4e-09
sp|Q9M081|SC24B_ARATH  Putative protein transport protein Se...    60   6e-09
sp|Q9UUI5|YIY8_SCHPO  Hypothetical protein C22F8.08 in chrom...    55   1e-07
sp|O95487|SC24B_HUMAN  Protein transport protein Sec24B (SEC...    54   3e-07
sp|P53953|SFB2_YEAST  SED5-binding protein 2 (SEC24-related ...    49   1e-05
sp|Q9SFU0|SC24A_ARATH  Protein transport protein Sec24-like ...    49   1e-05
sp|Q9USS7|YNB3_SCHPO  Hypothetical protein C4.03c in chromos...    47   5e-05

>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C (SEC24-related protein C)
          Length = 1094

 Score =  128 bits (321), Expect = 1e-29
 Identities = 69/144 (47%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
 Frame = +1

Query: 1    LLPLIKXXXXXXXXXLPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNC 180
            LLPL K          P A+R S   +S    YL+ENG+N+FLW+G +V Q  +Q++F+ 
Sbjct: 951  LLPLTKSPVESTTE--PPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSV 1008

Query: 181  SSSSEIVNR-HVLPVLNNNLSEEVNRIVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVE 357
            SS S+I +   VLPVL+N LS++V  ++  LR+ RSR+M L V+ Q DKME  FK FLVE
Sbjct: 1009 SSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVE 1068

Query: 358  DRDERGNSSYID*LCHVHKEIRSI 429
            D+   G +SY+D LCH+HKEIR +
Sbjct: 1069 DKSLSGGASYVDFLCHMHKEIRQL 1092

>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D (SEC24-related protein D)
          Length = 1032

 Score = 99.4 bits (246), Expect = 7e-21
 Identities = 50/131 (38%), Positives = 82/131 (62%), Gaps = 1/131 (0%)
 Frame = +1

Query: 46   LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPV 222
            LP+A+R S   +S +G +L+ NG++MFLW+G +   E +Q +FN  S + I  +  +LP 
Sbjct: 902  LPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPE 961

Query: 223  LNNNLSEEVNRIVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVEDRDERGNSSYID*LC 402
            + N  S+++  I+ +++  R   M L ++ Q ++ E  F++FLVED+   G SSY+D LC
Sbjct: 962  VGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFLC 1021

Query: 403  HVHKEIRSIPN 435
             VHKEI  + N
Sbjct: 1022 CVHKEICQLLN 1032

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
          Length = 1097

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 41/117 (35%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
 Frame = +1

Query: 76   NISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHVLPVLNNNLSEEVNR 255
            ++S +G Y +ENG +  ++IG++VN + LQ +FN  S++E+ +++VL   +N LS++ N 
Sbjct: 978  HLSDEGVYFLENGEDGLIYIGESVNSDILQKLFNVRSAAELPSQYVLQKYDNQLSKKFND 1037

Query: 256  IVQLLRSSRSRFMMLNVITQGDKM-ESAFKKFLVEDRDERGNSSYID*LCHVHKEIR 423
            +V  +R  RS ++ + +  +GD      F+ ++VEDR   G +SY+D L  VH++I+
Sbjct: 1038 VVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGS-GGASYVDFLVSVHRQIQ 1093

>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A (SEC24-related protein A)
          Length = 1078

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
 Frame = +1

Query: 49   PSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHV-LPVL 225
            P  ++ S   +S DGA+L++ G  + LW+G+N  Q +L  V    + + I      LP L
Sbjct: 953  PPILQLSVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQNYASIPQPMTDLPEL 1012

Query: 226  NNNLSEEVNRIVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVEDRDERGNSSYID*LCH 405
            +   S  +   +  LR  R  F +L VI     M++ F + ++EDR E    SY + L H
Sbjct: 1013 DTPESARIIAFISWLREQRPFFPILYVIRDESPMKANFLQNMIEDRTESA-LSYYEFLLH 1071

Query: 406  VHKEI 420
            + +++
Sbjct: 1072 IQQQV 1076

>sp|Q9M081|SC24B_ARATH Putative protein transport protein Sec24-like At4g32640
          Length = 1069

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 36/110 (32%), Positives = 59/110 (53%)
 Frame = +1

Query: 46   LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHVLPVL 225
            LP  I  S  +IS +G Y +ENG +  L++G++V+ + LQ +F  SS++EI N+ VL   
Sbjct: 952  LPPPIPLSSEHISNEGVYFLENGEDGLLFVGESVDSDILQKLFAVSSAAEIPNQFVLQQY 1011

Query: 226  NNNLSEEVNRIVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVEDRDERG 375
            +N LS++ N  V  +R  R  ++     +       +  +F VE    RG
Sbjct: 1012 DNQLSKKFNDAVNEIRRQRCSYLRSPYRSFLPSASVSCSEFAVEKHSRRG 1061

>sp|Q9UUI5|YIY8_SCHPO Hypothetical protein C22F8.08 in chromosome I
          Length = 926

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
 Frame = +1

Query: 46   LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPV 222
            LPSA+  +   + + G YL++  I+ FL+IG++   + L + F  +S +++   R  +PV
Sbjct: 795  LPSALNLTSALLQSFGLYLVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV 854

Query: 223  LNNNLSEEVNRIVQLLRS--SRSRFMMLNVITQGD---KMESAFKKFLVEDRDERGNSSY 387
            ++N L+  +N I+  LRS    S  M    + +GD   ++ S F    VEDR E  + SY
Sbjct: 855  IDNPLNVRINAILGKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHFVEDRSE-NSPSY 913

Query: 388  ID*LCHVHKEIR 423
            +  L  + +++R
Sbjct: 914  LQFLQTLKEKVR 925

>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B (SEC24-related protein B)
          Length = 1268

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
 Frame = +1

Query: 79   ISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHV-LPVLNNNLSEEVNR 255
            ++ +GA+L++ G   ++W+G+  +  ++++V   ++ + I  +   LP L+   SE    
Sbjct: 1153 LTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARS 1212

Query: 256  IVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVEDRDERGNSSYID*LCHVHKEI 420
             +  LR SR    +L+++      ++ F + L+EDR E    SY + L HV ++I
Sbjct: 1213 FITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAA-FSYYEFLLHVQQQI 1266

>sp|P53953|SFB2_YEAST SED5-binding protein 2 (SEC24-related protein 2)
          Length = 876

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = +1

Query: 46  LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPV 222
           LP  I  +       G YLI+N   +FLW+G +   E L +VFN  + S+I V +  LP+
Sbjct: 733 LPEPINATISLFERYGLYLIDNSAELFLWVGGDAVPELLIDVFNTDTISQIPVGKSELPL 792

Query: 223 LNNN-LSEEVNRIVQLLRSS 279
           LN++  +E + RI+  +R +
Sbjct: 793 LNDSPFNERLRRIIGRIREN 812

>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100
          Length = 1038

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 33/139 (23%), Positives = 72/139 (51%), Gaps = 14/139 (10%)
 Frame = +1

Query: 49   PSAIRDSFGNI-----------SADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSE 195
            PSA  D F ++            + G Y+ ++G  + LW G+ ++ +  +N+     +++
Sbjct: 900  PSAAHDDFKDVLRRLPLAAESLDSRGLYIYDDGFRLVLWFGRMLSPDIAKNLLGVDFAAD 959

Query: 196  IVNRHVLPVLNNNLSEEVNRIVQLLR-SSRSRFMMLNVITQGDKMESAF--KKFLVEDRD 366
            + +R       N +S+++ R+V+ LR S  S   M  ++ QG++    F   + L+ED+ 
Sbjct: 960  L-SRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQpreGFLLLRNLIEDQ- 1017

Query: 367  ERGNSSYID*LCHVHKEIR 423
              G+S Y+D +  +H++++
Sbjct: 1018 MGGSSGYVDWILQLHRQVQ 1036

>sp|Q9USS7|YNB3_SCHPO Hypothetical protein C4.03c in chromosome II
          Length = 891

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
 Frame = +1

Query: 46   LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI--VNRHVLP 219
            +P  +R S   I   GA+LI  G   +LW  Q  +   LQ++    S  +I  +    LP
Sbjct: 758  MPLCVRASRKFIEDGGAFLIVTGQKSYLWFHQRTSPLLLQDLLGVESLEDIDSLKALELP 817

Query: 220  VLNNNLSEEVNRIVQLLRSS-RSRFMMLNVITQG-DKMESAFKKFLVEDRDERGNSSYID 393
             L+  LS +V  ++  LR    S  +   ++ QG D  E      LVED    G   Y+D
Sbjct: 818  TLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIFSTLVEDNTREG-FGYLD 876

Query: 394  *LCHVHKEIRS 426
             L  +H+ + +
Sbjct: 877  FLTKIHESLHT 887

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,686,451
Number of Sequences: 369166
Number of extensions: 1252517
Number of successful extensions: 2657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2653
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00630

  1. Dr_sW_016_K14
  2. Dr_sW_011_L06