Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_K14
(571 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53992|SC24C_HUMAN Protein transport protein Sec24C (SEC... 101 1e-21
sp|O94855|SC24D_HUMAN Protein transport protein Sec24D (SEC... 77 3e-14
sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF 74 3e-13
sp|Q9M081|SC24B_ARATH Putative protein transport protein Se... 58 2e-08
sp|O95486|SC24A_HUMAN Protein transport protein Sec24A (SEC... 57 4e-08
sp|Q9UUI5|YIY8_SCHPO Hypothetical protein C22F8.08 in chrom... 53 5e-07
sp|O95487|SC24B_HUMAN Protein transport protein Sec24B (SEC... 52 8e-07
sp|P53953|SFB2_YEAST SED5-binding protein 2 (SEC24-related ... 49 9e-06
sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like ... 39 0.007
sp|Q9USS7|YNB3_SCHPO Hypothetical protein C4.03c in chromos... 39 0.007
>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C (SEC24-related protein C)
Length = 1094
Score = 101 bits (251), Expect = 1e-21
Identities = 57/122 (46%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 LLPLIKXXXXXXXXXLPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNC 180
LLPL K P A+R S +S YL+ENG+N+FLW+G +V Q +Q++F+
Sbjct: 951 LLPLTKSPVESTTE--PPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSV 1008
Query: 181 SSSSEIVNR-HVLPVLNNNLSEEVNRIVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVE 357
SS S+I + VLPVL+N LS++V ++ LR+ RSR+M L V+ Q DKME FK FLVE
Sbjct: 1009 SSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVE 1068
Query: 358 DR 363
D+
Sbjct: 1069 DK 1070
Score = 29.6 bits (65), Expect = 5.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 368 NGNSSYID*LCHVHEEFR 421
+G +SY+D LCH+H+E R
Sbjct: 1073 SGGASYVDFLCHMHKEIR 1090
>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D (SEC24-related protein D)
Length = 1032
Score = 77.0 bits (188), Expect = 3e-14
Identities = 37/107 (34%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Frame = +1
Query: 46 LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPV 222
LP+A+R S +S +G +L+ NG++MFLW+G + E +Q +FN S + I + +LP
Sbjct: 902 LPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPE 961
Query: 223 LNNNLSEEVNRIVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVEDR 363
+ N S+++ I+ +++ R M L ++ Q ++ E F++FLVED+
Sbjct: 962 VGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDK 1008
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
Length = 1097
Score = 73.6 bits (179), Expect = 3e-13
Identities = 38/116 (32%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Frame = +1
Query: 76 NISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHVLPVLNNNLSEEVNR 255
++S +G Y +ENG + ++IG++VN + LQ +FN S++E+ +++VL +N LS++ N
Sbjct: 978 HLSDEGVYFLENGEDGLIYIGESVNSDILQKLFNVRSAAELPSQYVLQKYDNQLSKKFND 1037
Query: 256 IVQLLRSSRSRFMMLNVITQGDKM-ESAFKKFLVEDRDEWQF*LYRLIVSCSRRIQ 420
+V +R RS ++ + + +GD F+ ++VEDR +VS R+IQ
Sbjct: 1038 VVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQ 1093
>sp|Q9M081|SC24B_ARATH Putative protein transport protein Sec24-like At4g32640
Length = 1069
Score = 57.8 bits (138), Expect = 2e-08
Identities = 31/83 (37%), Positives = 51/83 (61%)
Frame = +1
Query: 46 LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHVLPVL 225
LP I S +IS +G Y +ENG + L++G++V+ + LQ +F SS++EI N+ VL
Sbjct: 952 LPPPIPLSSEHISNEGVYFLENGEDGLLFVGESVDSDILQKLFAVSSAAEIPNQFVLQQY 1011
Query: 226 NNNLSEEVNRIVQLLRSSRSRFM 294
+N LS++ N V +R R ++
Sbjct: 1012 DNQLSKKFNDAVNEIRRQRCSYL 1034
>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A (SEC24-related protein A)
Length = 1078
Score = 56.6 bits (135), Expect = 4e-08
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Frame = +1
Query: 49 PSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHV-LPVL 225
P ++ S +S DGA+L++ G + LW+G+N Q +L V + + I LP L
Sbjct: 953 PPILQLSVEKLSRDGAFLMDAGSVLMLWVGKNCTQNFLSQVLGVQNYASIPQPMTDLPEL 1012
Query: 226 NNNLSEEVNRIVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVEDRDEWQF*LYRLIVSC 405
+ S + + LR R F +L VI M++ F + ++EDR E Y ++
Sbjct: 1013 DTPESARIIAFISWLREQRPFFPILYVIRDESPMKANFLQNMIEDRTESALSYYEFLLHI 1072
Query: 406 SRRI 417
+++
Sbjct: 1073 QQQV 1076
>sp|Q9UUI5|YIY8_SCHPO Hypothetical protein C22F8.08 in chromosome I
Length = 926
Score = 53.1 bits (126), Expect = 5e-07
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Frame = +1
Query: 46 LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPV 222
LPSA+ + + + G YL++ I+ FL+IG++ + L + F +S +++ R +PV
Sbjct: 795 LPSALNLTSALLQSFGLYLVDTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPV 854
Query: 223 LNNNLSEEVNRIVQLLRS--SRSRFMMLNVITQGD---KMESAFKKFLVEDRDE 369
++N L+ +N I+ LRS S M + +GD ++ S F VEDR E
Sbjct: 855 IDNPLNVRINAILGKLRSLDKGSTIMPSLYLVRGDGDPQLRSWFFSHFVEDRSE 908
>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B (SEC24-related protein B)
Length = 1268
Score = 52.4 bits (124), Expect = 8e-07
Identities = 27/114 (23%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Frame = +1
Query: 79 ISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEIVNRHV-LPVLNNNLSEEVNR 255
++ +GA+L++ G ++W+G+ + ++++V ++ + I + LP L+ SE
Sbjct: 1153 LTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARS 1212
Query: 256 IVQLLRSSRSRFMMLNVITQGDKMESAFKKFLVEDRDEWQF*LYRLIVSCSRRI 417
+ LR SR +L+++ ++ F + L+EDR E F Y ++ ++I
Sbjct: 1213 FITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 1266
>sp|P53953|SFB2_YEAST SED5-binding protein 2 (SEC24-related protein 2)
Length = 876
Score = 48.9 bits (115), Expect = 9e-06
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 46 LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPV 222
LP I + G YLI+N +FLW+G + E L +VFN + S+I V + LP+
Sbjct: 733 LPEPINATISLFERYGLYLIDNSAELFLWVGGDAVPELLIDVFNTDTISQIPVGKSELPL 792
Query: 223 LNNN-LSEEVNRIVQLLRSS 279
LN++ +E + RI+ +R +
Sbjct: 793 LNDSPFNERLRRIIGRIREN 812
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100
Length = 1038
Score = 39.3 bits (90), Expect = 0.007
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Frame = +1
Query: 49 PSAIRDSFGNI-----------SADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSE 195
PSA D F ++ + G Y+ ++G + LW G+ ++ + +N+ +++
Sbjct: 900 PSAAHDDFKDVLRRLPLAAESLDSRGLYIYDDGFRLVLWFGRMLSPDIAKNLLGVDFAAD 959
Query: 196 IVNRHVLPVLNNNLSEEVNRIVQLLR-SSRSRFMMLNVITQGDKMESAF--KKFLVEDR 363
+ +R N +S+++ R+V+ LR S S M ++ QG++ F + L+ED+
Sbjct: 960 L-SRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQpreGFLLLRNLIEDQ 1017
>sp|Q9USS7|YNB3_SCHPO Hypothetical protein C4.03c in chromosome II
Length = 891
Score = 39.3 bits (90), Expect = 0.007
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +1
Query: 46 LPSAIRDSFGNISADGAYLIENGINMFLWIGQNVNQEWLQNVFNCSSSSEI--VNRHVLP 219
+P +R S I GA+LI G +LW Q + LQ++ S +I + LP
Sbjct: 758 MPLCVRASRKFIEDGGAFLIVTGQKSYLWFHQRTSPLLLQDLLGVESLEDIDSLKALELP 817
Query: 220 VLNNNLSEEVNRIVQLLRSS-RSRFMMLNVITQG-DKMESAFKKFLVED 360
L+ LS +V ++ LR S + ++ QG D E LVED
Sbjct: 818 TLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIFSTLVED 866
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,705,086
Number of Sequences: 369166
Number of extensions: 1163331
Number of successful extensions: 2451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2447
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)