Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_L06
(504 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53992|SC24C_HUMAN Protein transport protein Sec24C (SEC... 111 9e-25
sp|O94855|SC24D_HUMAN Protein transport protein Sec24D (SEC... 85 1e-16
sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF 79 6e-15
sp|O95486|SC24A_HUMAN Protein transport protein Sec24A (SEC... 49 5e-06
sp|Q9UUI5|YIY8_SCHPO Hypothetical protein C22F8.08 in chrom... 45 7e-05
sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like ... 40 0.003
sp|P53953|SFB2_YEAST SED5-binding protein 2 (SEC24-related ... 35 0.078
sp|Q60281|YZ21_METJA Hypothetical protein MJECL21 31 1.5
sp|P38810|SFB3_YEAST SED5-binding protein 3 (SEC24-related ... 31 1.9
sp|Q43820|DCAM_PEA S-adenosylmethionine decarboxylase proen... 30 4.3
>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C (SEC24-related protein C)
Length = 1094
Score = 111 bits (278), Expect = 9e-25
Identities = 55/105 (52%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Frame = +2
Query: 17 FLWIGQNVNQEWLQNVFNCSSSSEIVNR-HVLPVLNNNLSEEVNRIVQLLRSSRSRFMML 193
FLW+G +V Q +Q++F+ SS S+I + VLPVL+N LS++V ++ LR+ RSR+M L
Sbjct: 990 FLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKL 1049
Query: 194 NVITQGDKMESAFKKFLVEDRGERGNSSYIDFLCHVHKEIRSILN 328
V+ Q DKME FK FLVED+ G +SY+DFLCH+HKEIR +L+
Sbjct: 1050 TVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094
>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D (SEC24-related protein D)
Length = 1032
Score = 84.7 bits (208), Expect = 1e-16
Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +2
Query: 17 FLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPVLNNNLSEEVNRIVQLLRSSRSRFMML 193
FLW+G + E +Q +FN S + I + +LP + N S+++ I+ +++ R M L
Sbjct: 928 FLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMKL 987
Query: 194 NVITQGDKMESAFKKFLVEDRGERGNSSYIDFLCHVHKEIRSILN 328
++ Q ++ E F++FLVED+G G SSY+DFLC VHKEI +LN
Sbjct: 988 TIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFLCCVHKEICQLLN 1032
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
Length = 1097
Score = 79.0 bits (193), Expect = 6e-15
Identities = 39/104 (37%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Frame = +2
Query: 20 LWIGQNVNQEWLQNVFNCSSSSEIVNRHVLPVLNNNLSEEVNRIVQLLRSSRSRFMMLNV 199
++IG++VN + LQ +FN S++E+ +++VL +N LS++ N +V +R RS ++ + +
Sbjct: 995 IYIGESVNSDILQKLFNVRSAAELPSQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRIKL 1054
Query: 200 ITQGDKMESA-FKKFLVEDRGERGNSSYIDFLCHVHKEIRSILN 328
+GD + F+ ++VEDRG G +SY+DFL VH++I+ LN
Sbjct: 1055 CKKGDPAGNMLFQSYMVEDRGS-GGASYVDFLVSVHRQIQHKLN 1097
>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A (SEC24-related protein A)
Length = 1078
Score = 49.3 bits (116), Expect = 5e-06
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 20 LWIGQNVNQEWLQNVFNCSSSSEIVNRHV-LPVLNNNLSEEVNRIVQLLRSSRSRFMMLN 196
LW+G+N Q +L V + + I LP L+ S + + LR R F +L
Sbjct: 979 LWVGKNCTQNFLSQVLGVQNYASIPQPMTDLPELDTPESARIIAFISWLREQRPFFPILY 1038
Query: 197 VITQGDKMESAFKKFLVEDRGERGNSSYIDFLCHVHKEI 313
VI M++ F + ++EDR E SY +FL H+ +++
Sbjct: 1039 VIRDESPMKANFLQNMIEDRTESA-LSYYEFLLHIQQQV 1076
>sp|Q9UUI5|YIY8_SCHPO Hypothetical protein C22F8.08 in chromosome I
Length = 926
Score = 45.4 bits (106), Expect = 7e-05
Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Frame = +2
Query: 14 RFLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPVLNNNLSEEVNRIVQLLRS--SRSRF 184
+FL+IG++ + L + F +S +++ R +PV++N L+ +N I+ LRS S
Sbjct: 820 QFLYIGKDAVPQLLIDAFGVNSLADLKAGRFTMPVIDNPLNVRINAILGKLRSLDKGSTI 879
Query: 185 MMLNVITQGD---KMESAFKKFLVEDRGERGNSSYIDFLCHVHKEIR 316
M + +GD ++ S F VEDR E + SY+ FL + +++R
Sbjct: 880 MPSLYLVRGDGDPQLRSWFFSHFVEDRSE-NSPSYLQFLQTLKEKVR 925
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100
Length = 1038
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/102 (23%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Frame = +2
Query: 20 LWIGQNVNQEWLQNVFNCSSSSEIVNRHVLPVLNNNLSEEVNRIVQLLRSSRSRFM-MLN 196
LW G+ ++ + +N+ ++++ +R N +S+++ R+V+ LR S + M
Sbjct: 937 LWFGRMLSPDIAKNLLGVDFAADL-SRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCF 995
Query: 197 VITQGDKMESAFK--KFLVEDRGERGNSSYIDFLCHVHKEIR 316
++ QG++ F + L+ED+ G+S Y+D++ +H++++
Sbjct: 996 LVRQGEQpreGFLLLRNLIEDQ-MGGSSGYVDWILQLHRQVQ 1036
>sp|P53953|SFB2_YEAST SED5-binding protein 2 (SEC24-related protein 2)
Length = 876
Score = 35.4 bits (80), Expect = 0.078
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +2
Query: 17 FLWIGQNVNQEWLQNVFNCSSSSEI-VNRHVLPVLNNN-LSEEVNRIVQLLRSS 172
FLW+G + E L +VFN + S+I V + LP+LN++ +E + RI+ +R +
Sbjct: 759 FLWVGGDAVPELLIDVFNTDTISQIPVGKSELPLLNDSPFNERLRRIIGRIREN 812
>sp|Q60281|YZ21_METJA Hypothetical protein MJECL21
Length = 432
Score = 31.2 bits (69), Expect = 1.5
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +2
Query: 20 LWIGQN-VNQEWLQNVFNCSSSSEIVNRHVLPVL--NNNLSEEVNRIVQLLRSS 172
+W G V Q+++ + NC + +I+ + +PV+ N+ +EV I+++LR +
Sbjct: 1 MWRGVGMVVQQFINRIRNCPLARDIIKKFFIPVIKERKNIEKEVEDILKVLRKN 54
>sp|P38810|SFB3_YEAST SED5-binding protein 3 (SEC24-related protein 3) (Lethal with SEC13
protein 1)
Length = 929
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Frame = +2
Query: 11 TRFLWIGQNVNQEWLQNVFNCSSSSEI----VNRHVLPVLNNNLSEEVNRIV----QLLR 166
T +LW +N N+ LQ++ + S + + LP +++++ + ++ Q++
Sbjct: 794 TIYLWFNENTNRMLLQDLLSVDESLPVSQISLFSGTLPETGTSINQKASNVIKNWQQVVN 853
Query: 167 SSRSRFMMLNVITQGDKMESAFKKFLVEDRGERGNSSYIDFLCHVHKEIRSIL 325
S ++L + + L ED+ SY ++L +HK+I+ L
Sbjct: 854 KSSLPLVLLRP-NVDQYYSNVMSQLLCEDKTVNRIESYDNYLVIMHKKIQEKL 905
>sp|Q43820|DCAM_PEA S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
Length = 353
Score = 29.6 bits (65), Expect = 4.3
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -1
Query: 255 RSSTKNFLKALSILSPCVITFSIINRDLED-LSN*TILFTSSDKLLLRTGNTCRLTIS 85
RS TK+ L + + C I S+ N D++ + + + LF + KL+++T T +L +S
Sbjct: 34 RSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKLIIKTCGTTKLLLS 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,030,100
Number of Sequences: 369166
Number of extensions: 957830
Number of successful extensions: 2031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2029
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)