Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00611 (791 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, m... 359 4e-99 sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondria... 358 7e-99 sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondr... 353 4e-97 sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondr... 348 1e-95 sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondr... 347 3e-95 sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisoma... 140 5e-33 sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain sp... 137 4e-32 sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain sp... 137 4e-32 sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase 133 5e-31 sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochond... 130 3e-30
>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) Length = 409 Score = 359 bits (922), Expect = 4e-99 Identities = 175/247 (70%), Positives = 204/247 (82%), Gaps = 1/247 (0%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCY 180 +SLV+ PI YG++ QK K++P LA+G IGCFGLTEPNHGSNPGGMET+A ++E +K Y Sbjct: 117 TSLVIGPIYNYGSEDQKQKYIPDLASGKKIGCFGLTEPNHGSNPGGMETKATWDETTKTY 176 Query: 181 VLNGSKTWITNSPIADVFIIWAKSDV-DNKIRGFILERGMKGLSTPVIEGKFSLRASITG 357 LNGSKTWI+NSP++DV ++WA+S +NKI+GFILERGMKGL+TP IEGK SLRASITG Sbjct: 177 KLNGSKTWISNSPVSDVMVVWARSARHNNKIKGFILERGMKGLTTPKIEGKLSLRASITG 236 Query: 358 QISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRNQF 537 QI+M+DV VP +N+ P GLQGPFGCLNNAR GI WG LGAAE C AR YTLDR QF Sbjct: 237 QIAMDDVPVPEENLLPNAEGLQGPFGCLNNARLGIAWGALGAAEECFHLARQYTLDRQQF 296 Query: 538 SKPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPEMISIIKRNSCGKALECA 717 +PLA+NQL+Q K+ADMLTEIS+GLQ CLRV RLKDEG V E ISIIKRNSCGKALE A Sbjct: 297 GRPLAQNQLMQLKMADMLTEISLGLQGCLRVSRLKDEGKVQSEQISIIKRNSCGKALEVA 356 Query: 718 RMARDML 738 R ARDML Sbjct: 357 RKARDML 363
>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) Length = 408 Score = 358 bits (920), Expect = 7e-99 Identities = 172/247 (69%), Positives = 207/247 (83%), Gaps = 1/247 (0%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKD-KFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKC 177 SSLVM PI YG++ Q+ K+LP+LA G L+GCFGLTEPNHGS+PG METRA +N ++ Sbjct: 114 SSLVMHPIYAYGSEEQQQQKYLPRLAKGELLGCFGLTEPNHGSDPGSMETRALHNPSNRS 173 Query: 178 YVLNGSKTWITNSPIADVFIIWAKSDVDNKIRGFILERGMKGLSTPVIEGKFSLRASITG 357 Y LNG+KTWITNSP+AD+F++WA+ + DN IRGF+LE+GM+GLS P IEGKFSLRAS TG Sbjct: 174 YTLNGAKTWITNSPVADLFVVWARCE-DNCIRGFLLEKGMRGLSAPKIEGKFSLRASATG 232 Query: 358 QISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRNQF 537 I M+DVEVP +N+ PK + L PFGCLNNARYGI WG LGAAEFCL TAR YTLDR QF Sbjct: 233 MIIMDDVEVPEENVLPKASSLAVPFGCLNNARYGISWGVLGAAEFCLHTARQYTLDRIQF 292 Query: 538 SKPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPEMISIIKRNSCGKALECA 717 PLAKNQLIQ+KLADMLTEI++GL ACL++GRLKD+ VTPEM+S++KRN+CGKAL+ A Sbjct: 293 GVPLAKNQLIQRKLADMLTEITLGLHACLQLGRLKDQDKVTPEMVSLLKRNNCGKALDIA 352 Query: 718 RMARDML 738 R ARDML Sbjct: 353 RQARDML 359
Score = 31.2 bits (69), Expect = 3.4 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = +2 Query: 743 NGISDEYHVIRHLLIL 790 NGISDEYHVIRH + L Sbjct: 362 NGISDEYHVIRHAMNL 377
>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) Length = 438 Score = 353 bits (905), Expect = 4e-97 Identities = 166/246 (67%), Positives = 204/246 (82%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCY 180 SSLVM PI YG++ Q+ K+LP+LA G L+GCFGLTEPNHGS+PGGMETRA++N ++ Y Sbjct: 145 SSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGGMETRARHNPSNQSY 204 Query: 181 VLNGSKTWITNSPIADVFIIWAKSDVDNKIRGFILERGMKGLSTPVIEGKFSLRASITGQ 360 L+G+KTWITNSP+AD+FI+WA+ + DN I GFILE+GM+G S P IEGKFSLRAS TG Sbjct: 205 TLSGTKTWITNSPVADLFIVWARCE-DNCIPGFILEKGMRGSSAPRIEGKFSLRASATGM 263 Query: 361 ISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRNQFS 540 I M+ VEVP +N+ P ++ L GPFGCLN ARYGI WG LGAAEFCL TAR Y LDR QF Sbjct: 264 IIMDSVEVPEENVLPNVSSLAGPFGCLNTARYGITWGVLGAAEFCLHTARQYALDRIQFG 323 Query: 541 KPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPEMISIIKRNSCGKALECAR 720 PLA+NQL+QKKLADMLTEI++GL ACL++GRLKD+ TPEM+S++KRN+CGKAL+ AR Sbjct: 324 VPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSMLKRNNCGKALDIAR 383 Query: 721 MARDML 738 ARD+L Sbjct: 384 QARDIL 389
Score = 31.2 bits (69), Expect = 3.4 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = +2 Query: 743 NGISDEYHVIRHLLIL 790 NGISDEYHVIRH + L Sbjct: 392 NGISDEYHVIRHAMNL 407
>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) Length = 438 Score = 348 bits (893), Expect = 1e-95 Identities = 165/246 (67%), Positives = 200/246 (81%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCY 180 SSLVM PI YG++ Q+ K+LP+LA G L+GCFGLTEPN GS+P METRA YN +K Y Sbjct: 145 SSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSY 204 Query: 181 VLNGSKTWITNSPIADVFIIWAKSDVDNKIRGFILERGMKGLSTPVIEGKFSLRASITGQ 360 LNG+KTWITNSP+AD+F++WA+ + D IRGF+LE+GM+GLS P I+GKFSLRAS TG Sbjct: 205 TLNGTKTWITNSPMADLFVVWARCE-DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGM 263 Query: 361 ISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRNQFS 540 I M+ VEVP +N+ P + L GPFGCLNNARYGI WG LGA+EFCL TAR Y LDR QF Sbjct: 264 IIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFG 323 Query: 541 KPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPEMISIIKRNSCGKALECAR 720 PLA+NQLIQKKLADMLTEI++GL ACL++GRLKD+ PEM+S++KRN+CGKAL+ AR Sbjct: 324 VPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIAR 383 Query: 721 MARDML 738 ARDML Sbjct: 384 QARDML 389
Score = 31.2 bits (69), Expect = 3.4 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = +2 Query: 743 NGISDEYHVIRHLLIL 790 NGISDEYHVIRH + L Sbjct: 392 NGISDEYHVIRHAMNL 407
>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) Length = 438 Score = 347 bits (889), Expect = 3e-95 Identities = 163/246 (66%), Positives = 199/246 (80%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCY 180 S LVM PI YG++ Q+ K+LP+LA G L+GCFGLTEPN GS+P METRA+YN +K Y Sbjct: 145 SPLVMHPIYAYGSEEQRQKYLPRLAKGELLGCFGLTEPNSGSDPSSMETRARYNSSNKSY 204 Query: 181 VLNGSKTWITNSPIADVFIIWAKSDVDNKIRGFILERGMKGLSTPVIEGKFSLRASITGQ 360 LNG+KTWITNSP+AD+F++WA+ + D +IRGF+LE+GM+GLS P I+GKFSLRAS TG Sbjct: 205 TLNGTKTWITNSPMADLFVVWARCE-DGRIRGFLLEKGMRGLSAPRIQGKFSLRASATGM 263 Query: 361 ISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRNQFS 540 I M+ VEVP +NM P + L G FGCLNN RYGI WG LGA+EFCL TAR Y LDR QF Sbjct: 264 IIMDGVEVPEENMLPGASSLGGSFGCLNNGRYGIAWGVLGASEFCLHTARQYALDRMQFG 323 Query: 541 KPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPEMISIIKRNSCGKALECAR 720 PLA+NQLIQKKLADMLTEI++GL ACL++GRLKD+ PEM+S++KRN+CGKAL+ AR Sbjct: 324 VPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIAR 383 Query: 721 MARDML 738 ARDML Sbjct: 384 QARDML 389
Score = 31.2 bits (69), Expect = 3.4 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = +2 Query: 743 NGISDEYHVIRHLLIL 790 NGISDEYHVIRH + L Sbjct: 392 NGISDEYHVIRHAMNL 407
>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal (AOX 4) (Short-chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6) Length = 436 Score = 140 bits (352), Expect = 5e-33 Identities = 85/246 (34%), Positives = 128/246 (52%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCY 180 SSL M I G++ QK+K+LP LA + + C+ LTEP++GS+ G+ T A E + Sbjct: 140 SSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGG--W 197 Query: 181 VLNGSKTWITNSPIADVFIIWAKSDVDNKIRGFILERGMKGLSTPVIEGKFSLRASITGQ 360 +NG K WI NS AD+ II+A++ N+I GFI+++ GL I K LR G Sbjct: 198 KINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGD 257 Query: 361 ISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRNQFS 540 I +++V VP ++ P + Q L +R + W +G + + Y +R QF Sbjct: 258 ILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFG 317 Query: 541 KPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPEMISIIKRNSCGKALECAR 720 PLA QL Q+KL ML + R+ +L + G +TP S+ K KA E A Sbjct: 318 APLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETAS 377 Query: 721 MARDML 738 + R++L Sbjct: 378 LGRELL 383
>sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain specific (SCAD) (Butyryl-CoA dehydrogenase) (BCAD) Length = 383 Score = 137 bits (344), Expect = 4e-32 Identities = 91/232 (39%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Frame = +1 Query: 4 SLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCYV 183 SL PI ++GT+ QK+KFL L G +G FGLTEPN G++ G +T A N+ Y Sbjct: 95 SLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDG-TYT 153 Query: 184 LNGSKTWITNSPIADVFIIWA---KSDVDNKIRGFILERGMKGLSTPVIEGKFSLRASIT 354 LNGSK +ITN AD++I++A KS ++ I FILE G G + E K + S T Sbjct: 154 LNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQT 213 Query: 355 GQISMEDVEVPADNMF-PKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRN 531 ++ +DV+VPA+NM + G + L+ R G+ LG AE L A Y+ R Sbjct: 214 MELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRV 273 Query: 532 QFSKPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPEMISIIKR 687 QF KPL K Q I KLADM +I + K EG +I KR Sbjct: 274 QFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKR 325
>sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific (SCAD) (Butyryl-CoA dehydrogenase) Length = 379 Score = 137 bits (344), Expect = 4e-32 Identities = 88/222 (39%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCY 180 +SL INE+GT+ QK K+L LA G IG +GLTEPN G++ G +T A + Y Sbjct: 91 TSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVL--EGDHY 148 Query: 181 VLNGSKTWITNSPIADVFIIWAKSDVDNKIRG---FILERGMKGLSTPVIEGKFSLRASI 351 V+NGSK +ITN +AD F+I+A +D +G FI+E+G KG S +E K +RAS Sbjct: 149 VINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAFIIEKGFKGFSIGKVEQKLGIRASS 208 Query: 352 TGQISMEDVEVPADNMFPKI-TGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDR 528 T ++ ED+ VP +NM K G L+ R GI LG AE AR Y +R Sbjct: 209 TTELVFEDMIVPVENMIGKEGKGFPIAMKTLDGGRIGIAAQALGIAEGAFNEARAYMKER 268 Query: 529 NQFSKPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGL 654 QF + L K Q + +ADM I + LK GL Sbjct: 269 KQFGRSLDKFQGLAWMMADMDVAIESARYLVYKAAYLKQAGL 310
>sp|P45867|ACDA_BACSU Acyl-CoA dehydrogenase Length = 379 Score = 133 bits (335), Expect = 5e-31 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Frame = +1 Query: 4 SLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCYV 183 SL WP+ +GT+ QK ++L +LA G IG F LTE GS+ G M+T A+ YV Sbjct: 92 SLCSWPLFAFGTEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKTTAE--RIGDDYV 149 Query: 184 LNGSKTWITNSPIADVFIIWAKSDVDNKIRG---FILERGMKGLSTPVIEGKFSLRASIT 354 LNGSK +ITN +AD++I++A +D + K +G FI+E+ +G T E K +R+S T Sbjct: 150 LNGSKVFITNGGVADIYIVFAVTDPEKKKKGVTAFIVEKDFEGFFTGKKEKKLGIRSSPT 209 Query: 355 GQISMEDVEVPAD-NMFPKITGLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTLDRN 531 +I ED VPA + + G + L+ R GI +G A+ L+ A Y +R Sbjct: 210 TEIMFEDCVVPASKRLGEEGEGFKIAMKTLDGGRNGIAAQAVGIAQGALDAALQYAKERK 269 Query: 532 QFSKPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGL 654 QF K +A+ Q I KLADM T I + L+ GL Sbjct: 270 QFGKSIAEQQGIAFKLADMATMIEASRLLTYQAAWLESSGL 310
>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial precursor (IVD) Length = 424 Score = 130 bits (328), Expect = 3e-30 Identities = 81/228 (35%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Frame = +1 Query: 1 SSLVMWPINEYGTQTQKDKFLPKLATGHLIGCFGLTEPNHGSNPGGMETRAKYNEKSKCY 180 S+L + I G + QK+K+LPKL +G IG ++EPN GS+ M+ +A+ +K Y Sbjct: 131 SNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAE--KKGDHY 188 Query: 181 VLNGSKTWITNSPIADVFIIWAKSDV-----DNKIRGFILERGMKGLSTPVIEGKFSLRA 345 VLNG+K WITN P AD+ +++AK+D+ I FI+E+GM G ST K +R Sbjct: 189 VLNGNKFWITNGPDADILVVYAKTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRG 248 Query: 346 SITGQISMEDVEVPADNMFPKIT-GLQGPFGCLNNARYGIGWGTLGAAEFCLETARNYTL 522 S T ++ ED +VPA N+ + + G+ L+ R + G LG + L+ Y Sbjct: 249 SNTCELVFEDCKVPAANVLSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLH 308 Query: 523 DRNQFSKPLAKNQLIQKKLADMLTEISIGLQACLRVGRLKDEGLVTPE 666 R F + + + QL+Q K+ADM T + Q V + DEG + P+ Sbjct: 309 VREAFGQKIGQFQLMQGKMADMYTRLMASRQYVYNVAKACDEGHIIPK 356
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,420,349 Number of Sequences: 369166 Number of extensions: 2045641 Number of successful extensions: 4591 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4338 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4487 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 7425705210 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)