Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_C12
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondria... 155 2e-38
sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, m... 151 5e-37
sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondr... 149 2e-36
sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondr... 148 3e-36
sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondr... 146 2e-35
sp|Q07417|ACADS_MOUSE Acyl-CoA dehydrogenase, short-chain s... 57 1e-08
sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain sp... 57 2e-08
sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase 56 2e-08
sp|Q9VSA3|ACADM_DROME Probable acyl-CoA dehydrogenase, medi... 56 2e-08
sp|P16219|ACADS_HUMAN Acyl-CoA dehydrogenase, short-chain s... 56 3e-08
>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD)
Length = 408
Score = 155 bits (393), Expect = 2e-38
Identities = 76/100 (76%), Positives = 82/100 (82%)
Frame = +3
Query: 3 KGLSTPVIEGKFSLRASITGQISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTL 182
+GLS P IEGKFSLRAS TG I M+DVEVP +N+ PK + L PFGCLNNARYGI WG L
Sbjct: 213 RGLSAPKIEGKFSLRASATGMIIMDDVEVPEENVLPKASSLAVPFGCLNNARYGISWGVL 272
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADMLTE 302
GAAEFCL TAR YTLDR QF PLAKNQLIQ+KLADMLTE
Sbjct: 273 GAAEFCLHTARQYTLDRIQFGVPLAKNQLIQRKLADMLTE 312
>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD)
Length = 409
Score = 151 bits (381), Expect = 5e-37
Identities = 72/100 (72%), Positives = 81/100 (81%)
Frame = +3
Query: 3 KGLSTPVIEGKFSLRASITGQISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTL 182
KGL+TP IEGK SLRASITGQI+M+DV VP +N+ P GLQGPFGCLNNAR GI WG L
Sbjct: 217 KGLTTPKIEGKLSLRASITGQIAMDDVPVPEENLLPNAEGLQGPFGCLNNARLGIAWGAL 276
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADMLTE 302
GAAE C AR YTLDR QF +PLA+NQL+Q K+ADMLTE
Sbjct: 277 GAAEECFHLARQYTLDRQQFGRPLAQNQLMQLKMADMLTE 316
>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD)
Length = 438
Score = 149 bits (376), Expect = 2e-36
Identities = 72/100 (72%), Positives = 80/100 (80%)
Frame = +3
Query: 3 KGLSTPVIEGKFSLRASITGQISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTL 182
+GLS P I+GKFSLRAS TG I M+ VEVP +N+ P + L GPFGCLNNARYGI WG L
Sbjct: 243 RGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVL 302
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADMLTE 302
GA+EFCL TAR Y LDR QF PLA+NQLIQKKLADMLTE
Sbjct: 303 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTE 342
>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD)
Length = 438
Score = 148 bits (374), Expect = 3e-36
Identities = 71/100 (71%), Positives = 79/100 (79%)
Frame = +3
Query: 3 KGLSTPVIEGKFSLRASITGQISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTL 182
+G S P IEGKFSLRAS TG I M+ VEVP +N+ P ++ L GPFGCLN ARYGI WG L
Sbjct: 243 RGSSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVSSLAGPFGCLNTARYGITWGVL 302
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADMLTE 302
GAAEFCL TAR Y LDR QF PLA+NQL+QKKLADMLTE
Sbjct: 303 GAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTE 342
>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD)
Length = 438
Score = 146 bits (368), Expect = 2e-35
Identities = 71/100 (71%), Positives = 78/100 (78%)
Frame = +3
Query: 3 KGLSTPVIEGKFSLRASITGQISMEDVEVPADNMFPKITGLQGPFGCLNNARYGIGWGTL 182
+GLS P I+GKFSLRAS TG I M+ VEVP +NM P + L G FGCLNN RYGI WG L
Sbjct: 243 RGLSAPRIQGKFSLRASATGMIIMDGVEVPEENMLPGASSLGGSFGCLNNGRYGIAWGVL 302
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADMLTE 302
GA+EFCL TAR Y LDR QF PLA+NQLIQKKLADMLTE
Sbjct: 303 GASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTE 342
>sp|Q07417|ACADS_MOUSE Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
precursor (SCAD) (Butyryl-CoA dehydrogenase)
Length = 412
Score = 57.0 bits (136), Expect = 1e-08
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +3
Query: 6 GLSTPVIEGKFSLRASITGQISMEDVEVPADNMFPKI-TGLQGPFGCLNNARYGIGWGTL 182
GL+ E K +RAS T + ED +P +N+ + G + L+ R GI L
Sbjct: 221 GLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQAL 280
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADM 293
G A+ L+ A Y +RN F PL K Q IQ KLADM
Sbjct: 281 GIAQASLDCAVKYAENRNAFGAPLTKLQNIQFKLADM 317
>sp|Q06319|ACDS_MEGEL Acyl-CoA dehydrogenase, short-chain specific (SCAD) (Butyryl-CoA
dehydrogenase) (BCAD)
Length = 383
Score = 56.6 bits (135), Expect = 2e-08
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 27 EGKFSLRASITGQISMEDVEVPADNMFPKI-TGLQGPFGCLNNARYGIGWGTLGAAEFCL 203
E K + S T ++ +DV+VPA+NM + G + L+ R G+ LG AE L
Sbjct: 203 EDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAAL 262
Query: 204 ETARNYTLDRNQFSKPLAKNQLIQKKLADM 293
A Y+ R QF KPL K Q I KLADM
Sbjct: 263 ADAVEYSKQRVQFGKPLCKFQSISFKLADM 292
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase
Length = 378
Score = 56.2 bits (134), Expect = 2e-08
Identities = 38/92 (41%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +3
Query: 27 EGKFSLRASITGQISMEDVEVPADNMFPKI-TGLQGPFGCLNNARYGIGWGTLGAAEFCL 203
E K L S T ++ ++ EVP N+ K G LN R GI LG AE L
Sbjct: 197 ERKLGLYGSNTTELIFDNAEVPEANLLGKEGDGFHIAMANLNVGRIGIAAQALGIAEAAL 256
Query: 204 ETARNYTLDRNQFSKPLAKNQLIQKKLADMLT 299
E A +Y R QF +P+A NQ I KLADM T
Sbjct: 257 EHAVDYAKQRVQFGRPIAANQGISFKLADMAT 288
>sp|Q9VSA3|ACADM_DROME Probable acyl-CoA dehydrogenase, medium-chain specific,
mitochondrial precursor (MCAD)
Length = 419
Score = 56.2 bits (134), Expect = 2e-08
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +3
Query: 6 GLSTPVIEGKFSLRASITGQISMEDVEVPADN-MFPKITGLQGPFGCLNNARYGIGWGTL 182
GL+ E RAS T I+ EDV VP +N + + G + G + R + G +
Sbjct: 226 GLTPGRKELNMGQRASDTRGITFEDVRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAV 285
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADM 293
G A+ CL+ A Y L+R F P+A +Q +Q LADM
Sbjct: 286 GLAQRCLDEALKYALERKTFGVPIAYHQAVQFMLADM 322
>sp|P16219|ACADS_HUMAN Acyl-CoA dehydrogenase, short-chain specific, mitochondrial
precursor (SCAD) (Butyryl-CoA dehydrogenase)
Length = 412
Score = 55.8 bits (133), Expect = 3e-08
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +3
Query: 6 GLSTPVIEGKFSLRASITGQISMEDVEVPADNMFPKI-TGLQGPFGCLNNARYGIGWGTL 182
GL+ E K +R S T + ED +P D++ + G + L+ R GI L
Sbjct: 221 GLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQAL 280
Query: 183 GAAEFCLETARNYTLDRNQFSKPLAKNQLIQKKLADM 293
G A+ L+ A NY +R F PL K Q+IQ KLADM
Sbjct: 281 GIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADM 317
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,421,870
Number of Sequences: 369166
Number of extensions: 765920
Number of successful extensions: 1823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)