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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00596
         (917 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9MYP6|DHR10_BOVIN  Dehydrogenase/reductase SDR family me...   194   3e-49
sp|Q9BPX1|DHR10_HUMAN  Dehydrogenase/reductase SDR family me...   192   1e-48
sp|Q8KWT4|BACC2_BACSU  Bacilysin biosynthesis oxidoreductase...   138   2e-32
sp|P39640|BACC_BACSU  Bacilysin biosynthesis oxidoreductase ...   132   1e-30
sp|Q9WYG0|Y325_THEMA  Hypothetical oxidoreductase TM0325          130   7e-30
sp|P46331|YXBG_BACSU  Hypothetical oxidoreductase yxbG            127   4e-29
sp|P50198|LINX_PSEPA  2,5-dichloro-2,5-cyclohexadiene-1,4-di...   126   1e-28
sp|Q9X248|FABG_THEMA  3-oxoacyl-[acyl-carrier-protein] reduc...   124   4e-28
sp|P50160|TS2_MAIZE  Sex determination protein tasselseed 2       121   2e-27
sp|Q8KWS9|BACC_BACAM  Bacilysin biosynthesis oxidoreductase ...   117   3e-26

>sp|Q9MYP6|DHR10_BOVIN Dehydrogenase/reductase SDR family member 10 (Retinal short-chain
           dehydrogenase/reductase retSDR3)
          Length = 270

 Score =  194 bits (493), Expect = 3e-49
 Identities = 112/263 (42%), Positives = 158/263 (60%), Gaps = 5/263 (1%)
 Frame = +2

Query: 107 FDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELSGRNVIFLFCNVT 286
           +  K++++ GG  GIGA  V+ F  + A VV C  D+  G  +  EL G   +FL C+VT
Sbjct: 7   YAGKVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPG--TVFLLCDVT 64

Query: 287 IEDDIKSVINHIENIHG-GKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSHFLFC 463
            E+D++++++  E I   G+LDC++NN G HP  +               +N+   +   
Sbjct: 65  REEDVRTLVS--ETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLT 122

Query: 464 KYSMPMLRKYRGCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVRVNCI 643
           K ++P LRK RG +IN+SS VG IGQ  AV Y  TKGA+TAMTK+LALDE++YGVRVNCI
Sbjct: 123 KLALPHLRKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCI 182

Query: 644 SPGIINTPL---LVQNTID-NCRLKGGLSYESEIDKMKKLIPLGDLGDPIDVAHACMFLA 811
           SPG I TPL   L  +T D    ++ G   +          PLG +G P +VA A +FLA
Sbjct: 183 SPGNIWTPLWEELAASTPDPTATIREGTLAQ----------PLGRMGQPAEVAAAAVFLA 232

Query: 812 SDMAKHITGSDIPVSGGAEIGYG 880
           S+ A   TG+++ V+GGAE+GYG
Sbjct: 233 SE-ATFCTGTELLVTGGAELGYG 254

>sp|Q9BPX1|DHR10_HUMAN Dehydrogenase/reductase SDR family member 10 (Retinal short-chain
           dehydrogenase/reductase retSDR3)
          Length = 270

 Score =  192 bits (488), Expect = 1e-48
 Identities = 109/263 (41%), Positives = 155/263 (58%), Gaps = 5/263 (1%)
 Frame = +2

Query: 107 FDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELSGRNVIFLFCNVT 286
           +  K++++ GG  GIGA  V+ F ++ A VV C  D+  G  L  EL G   +F+ C+VT
Sbjct: 7   YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG--AVFILCDVT 64

Query: 287 IEDDIKSVINHIENIHG-GKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSHFLFC 463
            EDD+K++++  E I   G+LDC++NN G HP  ++              +N+   +   
Sbjct: 65  QEDDVKTLVS--ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLT 122

Query: 464 KYSMPMLRKYRGCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVRVNCI 643
           K ++P LRK +G +IN+SS VG IGQ  AV Y  TKGA+TAMTK+LALDE+ YGVRVNCI
Sbjct: 123 KLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCI 182

Query: 644 SPGIINTPLLVQNTI----DNCRLKGGLSYESEIDKMKKLIPLGDLGDPIDVAHACMFLA 811
           SPG I TPL  +           ++ G+  +          PLG +G P +V  A +FLA
Sbjct: 183 SPGNIWTPLWEELAALMPDPRATIREGMLAQ----------PLGRMGQPAEVGAAAVFLA 232

Query: 812 SDMAKHITGSDIPVSGGAEIGYG 880
           S+ A   TG ++ V+GGAE+GYG
Sbjct: 233 SE-ANFCTGIELLVTGGAELGYG 254

>sp|Q8KWT4|BACC2_BACSU Bacilysin biosynthesis oxidoreductase bacC
          Length = 253

 Score =  138 bits (347), Expect = 2e-32
 Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 2/256 (0%)
 Frame = +2

Query: 101 MNFDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELSGRNVIFLFCN 280
           MN  +K +LI GG SGIG A V+ F +  A VV    D+  G  ++ + +   + F+  +
Sbjct: 1   MNLTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTD 60

Query: 281 VTIEDDIKSVINHIENIHGGKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSHFLF 460
           +T E   ++ I    +  GG LD LINN G       I            N+N+   FL 
Sbjct: 61  ITDEPACQNAIRSAVDKFGG-LDVLINNAGIEIV-APIHEMELSNWNKVLNVNLTGMFLM 118

Query: 461 CKYSMP-MLRKYRGCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVRVN 637
            K+++  ML+  +G IIN  S  G +   +   Y  +KG +  +T+S+A+D A++ +RVN
Sbjct: 119 SKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVN 178

Query: 638 CISPGIINTPLLVQNTIDNCRLKGGLSYESEIDKMK-KLIPLGDLGDPIDVAHACMFLAS 814
           C+ PGII+TPL  ++ ++N   +G L    EI K K K+ PL  LG P ++A+  +FLAS
Sbjct: 179 CVCPGIIDTPLNEKSFLEN--NEGTL---EEIKKEKAKVNPLLRLGKPEEIANVMLFLAS 233

Query: 815 DMAKHITGSDIPVSGG 862
           D++ ++TGS I   GG
Sbjct: 234 DLSSYMTGSAITADGG 249

>sp|P39640|BACC_BACSU Bacilysin biosynthesis oxidoreductase bacC
          Length = 253

 Score =  132 bits (333), Expect = 1e-30
 Identities = 90/256 (35%), Positives = 136/256 (53%), Gaps = 2/256 (0%)
 Frame = +2

Query: 101 MNFDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELSGRNVIFLFCN 280
           MN  +K +LI GG SGIG A V+ F    A VV    D+  G  +V + +   + F+  +
Sbjct: 1   MNLTDKTVLITGGASGIGYAAVQAFLGQQANVVVADIDEAQGEAMVRKENNDRLHFVQTD 60

Query: 281 VTIEDDIKSVINHIENIHGGKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSHFLF 460
           +T E   +  +    +  GG LD LINN G       I             +N+   FL 
Sbjct: 61  ITDEAACQHAVESAVHTFGG-LDVLINNAGIEIV-APIHEMELSDWNKVLQVNLTGMFLM 118

Query: 461 CKYSMP-MLRKYRGCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVRVN 637
            K+++  ML   +G IIN  S  G +   +   Y  +KG +  +TKS+A+D A++ +RVN
Sbjct: 119 SKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVN 178

Query: 638 CISPGIINTPLLVQNTIDNCRLKGGLSYESEIDKMK-KLIPLGDLGDPIDVAHACMFLAS 814
           C+ PGII+TPL  ++ ++N   +G L    EI K K K+ PL  LG P ++A+  +FLAS
Sbjct: 179 CVCPGIIDTPLNEKSFLEN--NEGTL---EEIKKEKAKVNPLLRLGKPEEIANVMLFLAS 233

Query: 815 DMAKHITGSDIPVSGG 862
           D++ ++TGS I   GG
Sbjct: 234 DLSSYMTGSAITADGG 249

>sp|Q9WYG0|Y325_THEMA Hypothetical oxidoreductase TM0325
          Length = 251

 Score =  130 bits (326), Expect = 7e-30
 Identities = 87/258 (33%), Positives = 129/258 (50%), Gaps = 3/258 (1%)
 Frame = +2

Query: 101 MNFDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELS--GRNVIFLF 274
           MNF  K++LI G  SGIG      FA   A V      ++ G E V  +   G    F+F
Sbjct: 1   MNFQGKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAFIF 60

Query: 275 CNVTIEDDIKSVINHIENIHGGKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSHF 454
            +V  +D  + V   +E    G+LD L+NN G  P    I             +NVK  F
Sbjct: 61  GDVA-KDAEQIVKKTVETF--GRLDILVNNAGIVPYGN-IEETSEEDFDKTMAVNVKGPF 116

Query: 455 LFCKYSMPMLRKYRG-CIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVR 631
           L  KY++  ++K  G  I+N+SS+ G IG      Y+++K A+  +T+SLA+D  +YG+R
Sbjct: 117 LLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIR 176

Query: 632 VNCISPGIINTPLLVQNTIDNCRLKGGLSYESEIDKMKKLIPLGDLGDPIDVAHACMFLA 811
           VN + PG   +  L+       R+K   + E  + KM   IP+  LG   ++A A +F A
Sbjct: 177 VNAVCPGTTQSEGLM------ARVKASPNPEELLKKMTSRIPMKRLGKEEEIAFAILFAA 230

Query: 812 SDMAKHITGSDIPVSGGA 865
            D A  +TGS I + GG+
Sbjct: 231 CDEAGFMTGSIINIDGGS 248

>sp|P46331|YXBG_BACSU Hypothetical oxidoreductase yxbG
          Length = 273

 Score =  127 bits (319), Expect = 4e-29
 Identities = 83/257 (32%), Positives = 129/257 (50%), Gaps = 2/257 (0%)
 Frame = +2

Query: 98  MMNFDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNEL--SGRNVIFL 271
           M   +NK  +I G  +GIG A  + FA+  A V+    ++    E V+ +  +G      
Sbjct: 1   MGRLENKTAVITGAATGIGQATAEVFANEGARVIIGDINKDQMEETVDAIRKNGGQAESF 60

Query: 272 FCNVTIEDDIKSVINHIENIHGGKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSH 451
             +V+ E+ +K+  + I++  G  +D L NN G   E  K+             ++++  
Sbjct: 61  HLDVSDENSVKAFADQIKDACG-TIDILFNNAGVDQEGGKVHEYPVDLFDRIIAVDLRGT 119

Query: 452 FLFCKYSMPMLRKYRGCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVR 631
           FL  KY +P++ +  G IIN SS  G     +   Y   KG IT +TK++A+D A  G+R
Sbjct: 120 FLCSKYLIPLMLENGGSIINTSSMSGRAADLDRSGYNAAKGGITNLTKAMAIDYARNGIR 179

Query: 632 VNCISPGIINTPLLVQNTIDNCRLKGGLSYESEIDKMKKLIPLGDLGDPIDVAHACMFLA 811
           VN ISPG I TPL+ +      +  G    E   +  K + PLG LG P ++A   +FLA
Sbjct: 180 VNSISPGTIETPLIDKLAGTKEQEMG----EQFREANKWITPLGRLGQPKEMATVALFLA 235

Query: 812 SDMAKHITGSDIPVSGG 862
           SD + ++TG DI   GG
Sbjct: 236 SDDSSYVTGEDITADGG 252

>sp|P50198|LINX_PSEPA 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (2,5-DDOL
           dehydrogenase)
          Length = 250

 Score =  126 bits (316), Expect = 1e-28
 Identities = 92/260 (35%), Positives = 132/260 (50%), Gaps = 7/260 (2%)
 Frame = +2

Query: 116 KIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNEL--SGRNVIFLFCNVTI 289
           K+ LI GG SG+GAA  K+FA   A VV    +++    +V E+  +G + +F+  +VT 
Sbjct: 8   KVALITGGASGLGAAQAKRFAEEGAKVVIGDLNEEMAKGVVAEIRAAGGDALFIRLDVTD 67

Query: 290 EDDIKSVINHIENIHGGKLDCLINNVGT-HP---EDRKIXXXXXXXXXXXXNINVKSHFL 457
                + I    +  GG L  L N  G  HP   E+  I             +N  + FL
Sbjct: 68  AASWNNAIAAAVDGFGG-LTTLSNTAGIIHPGGFEEESIEGWNKMVA-----VNQTAIFL 121

Query: 458 FCKYSMPMLRKY-RGCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVRV 634
             K ++P L K   G IIN+SS +G        +Y  TK A+  M+K+ AL+  + GVRV
Sbjct: 122 GIKAAIPELVKSGNGSIINISSLIGMFPTAGNASYCATKAAVRIMSKAAALEFVDRGVRV 181

Query: 635 NCISPGIINTPLLVQNTIDNCRLKGGLSYESEIDKMKKLIPLGDLGDPIDVAHACMFLAS 814
           N I PG +NTP+      D             + +    IP+G LGDPID+A+  +FLAS
Sbjct: 182 NTIVPGGMNTPITANVPPD------------VLKQQTSQIPMGKLGDPIDIANGALFLAS 229

Query: 815 DMAKHITGSDIPVSGGAEIG 874
           D AK+ITG D+P+ GG  +G
Sbjct: 230 DEAKYITGVDLPIDGGWSVG 249

>sp|Q9X248|FABG_THEMA 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier
           protein reductase)
          Length = 246

 Score =  124 bits (311), Expect = 4e-28
 Identities = 86/260 (33%), Positives = 127/260 (48%), Gaps = 3/260 (1%)
 Frame = +2

Query: 101 MNFDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELSGR--NVIFLF 274
           M  + K+ LI G  SGIG A    FA   ATV+     ++N + LV E  G    V    
Sbjct: 1   MRLEGKVCLITGAASGIGKATTLLFAQEGATVIAGDISKENLDSLVKEAEGLPGKVDPYV 60

Query: 275 CNVTIEDDIKSVINHIENIHGGKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSHF 454
            NVT  D IK V+  +   +G ++D L+NN G    D  +            N+N+K  F
Sbjct: 61  LNVTDRDQIKEVVEKVVQKYG-RIDVLVNNAGI-TRDALLVRMKEEDWDAVINVNLKGVF 118

Query: 455 LFCKYSMP-MLRKYRGCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVR 631
              +  +P M+++  G I+N+SS VG  G      YA +K  +  MTK+ A + A   +R
Sbjct: 119 NVTQMVVPYMIKQRNGSIVNVSSVVGIYGNPGQTNYAASKAGVIGMTKTWAKELAGRNIR 178

Query: 632 VNCISPGIINTPLLVQNTIDNCRLKGGLSYESEIDKMKKLIPLGDLGDPIDVAHACMFLA 811
           VN ++PG I TP + +   +  R       E+ + +    IPLG  G P +VA   +FLA
Sbjct: 179 VNAVAPGFIETP-MTEKLPEKAR-------ETALSR----IPLGRFGKPEEVAQVILFLA 226

Query: 812 SDMAKHITGSDIPVSGGAEI 871
           SD + ++TG  I + GG  I
Sbjct: 227 SDESSYVTGQVIGIDGGLVI 246

>sp|P50160|TS2_MAIZE Sex determination protein tasselseed 2
          Length = 336

 Score =  121 bits (304), Expect = 2e-27
 Identities = 85/274 (31%), Positives = 133/274 (48%), Gaps = 23/274 (8%)
 Frame = +2

Query: 110 DNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELSGRNVIFLFCNVTI 289
           D K+ ++ GG  GIG A V+ FA   A VV    D   G  L + L G  V F+ C+V++
Sbjct: 54  DGKVAIVTGGARGIGEAIVRLFAKHGARVVIADIDDAAGEALASAL-GPQVSFVRCDVSV 112

Query: 290 EDDIKSVINHIENIHGGKLDCLINNVGTHPED----RKIXXXXXXXXXXXXNINVKSHFL 457
           EDD++  ++   + HGG+LD   NN G         R I             +N     L
Sbjct: 113 EDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAAL 172

Query: 458 FCKYSMPMLRKYR-GCIINMSSQVGTIGQKNAVTYAITKGAITAMTKSLALDEAEYGVRV 634
             K++   +   R G I++++S    +G      Y  +K AI  +TK+ A +   +GVRV
Sbjct: 173 GMKHAARAMAPRRAGSIVSVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRV 232

Query: 635 NCISPGIINTPLLV--------QNTIDNCR-----LKGGLSYESEIDKMKKLIP-----L 760
           NC+SP  + TP+L+          T D  R     L   +  + E++KM++++       
Sbjct: 233 NCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLATLK 292

Query: 761 GDLGDPIDVAHACMFLASDMAKHITGSDIPVSGG 862
           G    P D+A A +FLASD A++I+G ++ V GG
Sbjct: 293 GPTLRPRDIAEAVLFLASDEARYISGHNLVVDGG 326

>sp|Q8KWS9|BACC_BACAM Bacilysin biosynthesis oxidoreductase bacC
          Length = 254

 Score =  117 bits (294), Expect = 3e-26
 Identities = 87/259 (33%), Positives = 135/259 (52%), Gaps = 5/259 (1%)
 Frame = +2

Query: 101 MNFDNKIILIVGGTSGIGAACVKQFASTNATVVFCSNDQKNGNELVNELSGRNVIFLFCN 280
           MN  +K +LI GG SGIG A V+ F +  A VV    D+  G  ++ + +   + F+  +
Sbjct: 1   MNLTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVQTD 60

Query: 281 VTIEDDIKSVINHIENIHGGKLDCLINNVGTHPEDRKIXXXXXXXXXXXXNINVKSHFLF 460
           +T E   ++ I    +  GG LD LINN G       I            N+N+   FL 
Sbjct: 61  ITNEPACQNAILSAVDKFGG-LDVLINNAGIEIV-APIHEMELSDWNKVLNVNLTGMFLM 118

Query: 461 CKYSMP-MLRKYRGCIINMSSQVGTIGQKNAVTYAITKGAI---TAMTKSLALDEAEYGV 628
            K+++  ML+  +G IIN  S  G +   +   Y  +KG +    A  +   +  A++ +
Sbjct: 119 SKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQTDAFYRPSII--AKHNI 176

Query: 629 RVNCISPGIINTPLLVQNTIDNCRLKGGLSYESEIDKMK-KLIPLGDLGDPIDVAHACMF 805
           RVNC+ PGII+TPL  ++ ++N   +G L    EI K K K+ PL  LG P ++A+  +F
Sbjct: 177 RVNCVCPGIIDTPLNEKSFLEN--NEGTL---EEIKKEKAKVNPLLRLGKPEEIANVMLF 231

Query: 806 LASDMAKHITGSDIPVSGG 862
           LASD++ ++TGS I   GG
Sbjct: 232 LASDLSSYMTGSAITADGG 250

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,837,036
Number of Sequences: 369166
Number of extensions: 1655758
Number of successful extensions: 5033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4704
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_015_I19
2. Dr_sW_026_L18