DrC_00578
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00578 (889 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P06605|TBA3_DROME Tubulin alpha-3 chain 197 3e-50 sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-... 197 4e-50 sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 196 6e-50 sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 196 6e-50 sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 196 6e-50 sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 196 7e-50 sp|P09734|TBA3_YEAST Tubulin alpha-3 chain 196 7e-50 sp|Q06331|TBA_OCTDO Tubulin alpha chain 196 7e-50 sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 195 1e-49 sp|P06603|TBA1_DROME Tubulin alpha-1 chain 195 1e-49
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain Length = 450 Score = 197 bits (501), Expect = 3e-50 Identities = 90/200 (45%), Positives = 134/200 (67%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++ ++S ITA RF+ +L + QTNLVPYPRIHFPLV+YAP+ S + Sbjct: 222 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 LS E+T A F P+NQMV V+ GK M+C +LYRG V +DV I ++K + + Sbjct: 282 YHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin K-alpha-1) Length = 451 Score = 197 bits (500), Expect = 4e-50 Identities = 90/200 (45%), Positives = 133/200 (66%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++S ++S ITA RF+ +L + QTNLVPYPRIHFPL +YAP+ S + Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + + Sbjct: 282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFVLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific Length = 450 Score = 196 bits (499), Expect = 6e-50 Identities = 89/200 (44%), Positives = 134/200 (67%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++ ++S ITA RF+ +L + QTNLVPYPRIHFPLV+YAP+ S + Sbjct: 222 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 +LS E+T A F P+NQMV + GK M+C +LYRG V +DV I ++K + + Sbjct: 282 YHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype M-alpha-4) sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific alpha-tubulin) sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific alpha-tubulin) (Tubulin H2-alpha) Length = 448 Score = 196 bits (499), Expect = 6e-50 Identities = 90/200 (45%), Positives = 133/200 (66%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++S ++S ITA RF+ +L + QTNLVPYPRIHFPL +YAP+ S + Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + + Sbjct: 282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I) sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin K-alpha-1) sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype M-alpha-2) sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1) sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2) Length = 451 Score = 196 bits (499), Expect = 6e-50 Identities = 90/200 (45%), Positives = 133/200 (66%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++S ++S ITA RF+ +L + QTNLVPYPRIHFPL +YAP+ S + Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + + Sbjct: 282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) Length = 451 Score = 196 bits (498), Expect = 7e-50 Identities = 90/200 (45%), Positives = 133/200 (66%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++S ++S ITA RF+ +L + QTNLVPYPRIHFPL +YAP+ S + Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + + Sbjct: 282 YHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|P09734|TBA3_YEAST Tubulin alpha-3 chain Length = 445 Score = 196 bits (498), Expect = 7e-50 Identities = 91/200 (45%), Positives = 133/200 (66%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P F +LN +++ ++S +TA RF+ +L + QTNLVPYPRIHFPLVSYAPI S + Sbjct: 223 PSFSNLNGLIAQVISSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKKRA 282 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 S E+T A F P NQMV + +GK M+ LLYRG V +DV + VK K + Sbjct: 283 THESNSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTV 342 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 + V+WCPTGFK+GIC++P SV P + L++ R+V +L N+T + + R+ QKF ++++ Sbjct: 343 QMVDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAK 402 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 403 RAFVHWYVGEGMEEGEFTEA 422
>sp|Q06331|TBA_OCTDO Tubulin alpha chain Length = 451 Score = 196 bits (498), Expect = 7e-50 Identities = 92/200 (46%), Positives = 134/200 (67%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++S ++S ITA RF+ +L + QTNLVPYPRIHFPLV+YAPI S + Sbjct: 222 PSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 L+ EVT A F P+NQMV + GK M+C +LYRG V +DV I ++K + + Sbjct: 282 YHEQLAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T V + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) Length = 449 Score = 195 bits (496), Expect = 1e-49 Identities = 90/200 (45%), Positives = 133/200 (66%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++S ++S ITA RF+ +L + QTNLVPYPRIHFPL +YAP+ S + Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 L+ E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + + Sbjct: 282 YHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T V + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain Length = 450 Score = 195 bits (496), Expect = 1e-49 Identities = 89/200 (44%), Positives = 133/200 (66%) Frame = +3 Query: 24 PVFPHLNQIVSHLMSGITACTRFERPWGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQST 203 P + +LN+++ ++S ITA RF+ +L + QTNLVPYPRIHFPLV+YAP+ S + Sbjct: 222 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 281 Query: 204 AMSVLSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDM 383 LS E+T A F P+NQMV + GK M+C +LYRG V +DV I ++K + + Sbjct: 282 YHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTI 341 Query: 384 EWVEWCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSR 563 ++V+WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF ++++ Sbjct: 342 QFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAK 401 Query: 564 KAFLHWFISEGMDEKEFKDA 623 +AF+HW++ EGM+E EF +A Sbjct: 402 RAFVHWYVGEGMEEGEFSEA 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,753,829
Number of Sequences: 369166
Number of extensions: 1855197
Number of successful extensions: 5044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4832
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
