Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_L11
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 199 1e-50
sp|Q06331|TBA_OCTDO Tubulin alpha chain 198 1e-50
sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-... 198 1e-50
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 198 2e-50
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 198 2e-50
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 198 2e-50
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 197 2e-50
sp|P09734|TBA3_YEAST Tubulin alpha-3 chain 197 3e-50
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 197 4e-50
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 197 4e-50
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 199 bits (505), Expect = 1e-50
Identities = 91/196 (46%), Positives = 134/196 (68%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++ Q++S ITA RF+ L +L + QTNLVPYPRIHFPLV+YAP+ S +
Sbjct: 226 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
LS E+T A F P+NQMV V+ GK M+C +LYRG V +DV I ++K + +++V+
Sbjct: 286 LSVAEITNACFEPANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|Q06331|TBA_OCTDO Tubulin alpha chain
Length = 451
Score = 198 bits (504), Expect = 1e-50
Identities = 93/196 (47%), Positives = 134/196 (68%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++SQ++S ITA RF+ L +L + QTNLVPYPRIHFPLV+YAPI S +
Sbjct: 226 NLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
L+ EVT A F P+NQMV + GK M+C +LYRG V +DV I ++K + +++V+
Sbjct: 286 LAVAEVTSACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRSIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T V + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
Length = 451
Score = 198 bits (504), Expect = 1e-50
Identities = 91/196 (46%), Positives = 133/196 (67%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++SQ++S ITA RF+ L +L + QTNLVPYPRIHFPL +YAP+ S +
Sbjct: 226 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + +++V+
Sbjct: 286 LSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFVLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 198 bits (503), Expect = 2e-50
Identities = 90/196 (45%), Positives = 134/196 (68%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++ Q++S ITA RF+ L +L + QTNLVPYPRIHFPLV+YAP+ S + +
Sbjct: 226 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEM 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
LS E+T A F P+NQMV + GK M+C +LYRG V +DV I ++K + +++V+
Sbjct: 286 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 198 bits (503), Expect = 2e-50
Identities = 91/196 (46%), Positives = 133/196 (67%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++SQ++S ITA RF+ L +L + QTNLVPYPRIHFPL +YAP+ S +
Sbjct: 226 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + +++V+
Sbjct: 286 LSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 198 bits (503), Expect = 2e-50
Identities = 91/196 (46%), Positives = 133/196 (67%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++SQ++S ITA RF+ L +L + QTNLVPYPRIHFPL +YAP+ S +
Sbjct: 226 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + +++V+
Sbjct: 286 LSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 197 bits (502), Expect = 2e-50
Identities = 91/196 (46%), Positives = 133/196 (67%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++SQ++S ITA RF+ L +L + QTNLVPYPRIHFPL +YAP+ S +
Sbjct: 226 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
LS E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + +++V+
Sbjct: 286 LSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|P09734|TBA3_YEAST Tubulin alpha-3 chain
Length = 445
Score = 197 bits (501), Expect = 3e-50
Identities = 91/196 (46%), Positives = 133/196 (67%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN +++Q++S +TA RF+ L +L + QTNLVPYPRIHFPLVSYAPI S +
Sbjct: 227 NLNGLIAQVISSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYAPILSKKRATHES 286
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
S E+T A F P NQMV + +GK M+ LLYRG V +DV + VK K ++ V+
Sbjct: 287 NSVSEITNACFEPGNQMVKCDPTKGKYMANCLLYRGDVVTRDVQRAVEQVKNKKTVQMVD 346
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFK+GIC++P SV P + L++ R+V +L N+T + + R+ QKF +++++AF+
Sbjct: 347 WCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFV 406
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 407 HWYVGEGMEEGEFTEA 422
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 197 bits (500), Expect = 4e-50
Identities = 91/196 (46%), Positives = 133/196 (67%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++SQ++S ITA RF+ L +L + QTNLVPYPRIHFPL +YAP+ S +
Sbjct: 226 NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
L+ E+T A F P+NQMV + GK M+C LLYRG V +DV I ++K + +++V+
Sbjct: 286 LTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T V + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 197 bits (500), Expect = 4e-50
Identities = 90/196 (45%), Positives = 133/196 (67%)
Frame = +3
Query: 6 HLNQIVSQLMSGITACTRFESPLGCNLIDMQTNLVPYPRIHFPLVSYAPIGSPQSTAMSV 185
+LN+++ Q++S ITA RF+ L +L + QTNLVPYPRIHFPLV+YAP+ S +
Sbjct: 226 NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQ 285
Query: 186 LSTIEVTKAAFHPSNQMVSVESNEGKVMSCSLLYRGAVTAQDVFDTIHSVKRGKDMEWVE 365
LS E+T A F P+NQMV + GK M+C +LYRG V +DV I ++K + +++V+
Sbjct: 286 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
Query: 366 WCPTGFKVGICWQPLSVAPQNILSSAHRSVTLLKNSTVVRTVFNRLGQKFWQLFSRKAFL 545
WCPTGFKVGI +QP +V P L+ R+V +L N+T + + RL KF +++++AF+
Sbjct: 346 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV 405
Query: 546 HWFISEGMDEKEFKDA 593
HW++ EGM+E EF +A
Sbjct: 406 HWYVGEGMEEGEFSEA 421
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,468,443
Number of Sequences: 369166
Number of extensions: 1728322
Number of successful extensions: 4855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4644
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)