Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B19
(246 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 70 2e-12
sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8) 70 2e-12
sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8) 69 3e-12
sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8) 69 3e-12
sp|P09643|TBA4_CHICK Tubulin alpha-4 chain 69 3e-12
sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4... 69 4e-12
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 69 4e-12
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 69 4e-12
sp|Q06331|TBA_OCTDO Tubulin alpha chain 69 4e-12
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 69 4e-12
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 69.7 bits (169), Expect = 2e-12
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++ ++S ITA RF+ DL + TNL PYPRIHFPLV+YAP+ S +
Sbjct: 222 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
+LS E+T A
Sbjct: 282 YHEMLSVAEITNA 294
>sp|Q6AY56|TBA8_RAT Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 69.7 bits (169), Expect = 2e-12
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++S ++S ITA RF+ DL + TNL PYPRIHFPLV+YAPI S +
Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIVSAEKA 281
Query: 204 AMSVLSPIEVTKA 242
LS E+T +
Sbjct: 282 YHEQLSVAEITSS 294
>sp|Q9NY65|TBA8_HUMAN Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 69.3 bits (168), Expect = 3e-12
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++S ++S ITA RF+ DL + TNL PYPRIHFPLV+YAPI S +
Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
LS E+T +
Sbjct: 282 YHEQLSVAEITSS 294
>sp|Q9JJZ2|TBA8_MOUSE Tubulin alpha-8 chain (Alpha-tubulin 8)
Length = 449
Score = 69.3 bits (168), Expect = 3e-12
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++S ++S ITA RF+ DL + TNL PYPRIHFPLV+YAPI S +
Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
LS E+T +
Sbjct: 282 YHEQLSVAEITSS 294
>sp|P09643|TBA4_CHICK Tubulin alpha-4 chain
Length = 322
Score = 68.9 bits (167), Expect = 3e-12
Identities = 33/73 (45%), Positives = 46/73 (63%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++S ++S ITA RF+ DL + TNL PYPRIHFPLV+YAPI S +
Sbjct: 97 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISSERA 156
Query: 204 AMSVLSPIEVTKA 242
LS E+T +
Sbjct: 157 YHEQLSVAEITSS 169
>sp|P68368|TBA4_MOUSE Tubulin alpha-4 chain (Alpha-tubulin 4) (Alpha-tubulin isotype
M-alpha-4)
sp|P68367|TBA1_MACFA Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin)
sp|P68366|TBA1_HUMAN Tubulin alpha-1 chain (Alpha-tubulin 1) (Testis-specific
alpha-tubulin) (Tubulin H2-alpha)
Length = 448
Score = 68.6 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 45/73 (61%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++S ++S ITA RF+ DL + TNL PYPRIHFPL +YAP+ S +
Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
LS E+T A
Sbjct: 282 YHEQLSVAEITNA 294
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 68.6 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 45/73 (61%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++ ++S ITA RF+ DL + TNL PYPRIHFPLV+YAP+ S +
Sbjct: 222 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
LS E+T A
Sbjct: 282 YHEQLSVAEITNA 294
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 68.6 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 45/73 (61%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++ ++S ITA RF+ DL + TNL PYPRIHFPLV+YAP+ S +
Sbjct: 222 PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
LS E+T A
Sbjct: 282 YHEQLSVAEITNA 294
>sp|Q06331|TBA_OCTDO Tubulin alpha chain
Length = 451
Score = 68.6 bits (166), Expect = 4e-12
Identities = 34/73 (46%), Positives = 46/73 (63%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++S ++S ITA RF+ DL + TNL PYPRIHFPLV+YAPI S +
Sbjct: 222 PSYTNLNRLISQVVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
L+ EVT A
Sbjct: 282 YHEQLAVAEVTSA 294
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 68.6 bits (166), Expect = 4e-12
Identities = 32/73 (43%), Positives = 45/73 (61%)
Frame = +3
Query: 24 PVFPHLYQIVSHLMSGITACARFERPWGCDLIDMHTNLFPYPRIHFPLVSYAPIGSPQST 203
P + +L +++S ++S ITA RF+ DL + TNL PYPRIHFPL +YAP+ S +
Sbjct: 222 PTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKA 281
Query: 204 AMSVLSPIEVTKA 242
LS E+T A
Sbjct: 282 YHEQLSVAEITNA 294
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,993,044
Number of Sequences: 369166
Number of extensions: 504455
Number of successful extensions: 1354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)