Planarian EST Database

DrC_00577

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00577 ATTCGGCACGAGGTTCGGATTTTGATGATTGTCAAAGAATTTATAAACAGAATCAAGAAC AAGACGAAGAAACAAAATTGAAAGAGAAGAACAAAAAAGTCACCAAAAGAAGCCAATCTT ATCCTCCTACAGAGTTCCCAAATTATATGGGTTATTATATGGTTCCGCCAGAAATGAATG GCATCAGTCCTTCCCCGACTTATCCGTATGAGCATCAAATGCCCCTTATTTGGATGTCTG TTCAACAATGCGCTAATGGATATATACTGACTCCAGTAACCCCAGACATTTATAGCGCCA ATTATCCATCATATTTCTATCATTCACCGCCAATGTCTGCTCCAGGTTTTATATATTCAC CAACGGTTTTCAGTGATGTTCATCACACCACAGTTGAAAACGGCGACAAAAGTAATGACA ATTTAAGCGTTAGTGAACTTAAAAAAGTGTTGCCGGAAGAAACCAATAACCATTCGAACT CAATCGATGATTATGCATCGGAAGAAACTGCATTCGGATCGCCGAACAGTGAAAGCCTTT GATGAATGTCTTATTTTCTACTGCTATTCGTGAAAATCGGTATTGTTGTCTGTCTGCTAA CTACTTACTTCTCCTTACATCTAAAAACCCCCACAAAAACATTTCTAACAAAAATCCATT GGAACTGTTCAGCATGTGTAACAAAGAATTATTAAACAATATCCCCAATGATTGCTTTTG CTGTGCTGTATTTTTTAATAAAGTAGTTGATAAAAAATTCGAAAATTGTGTATTATTATT TTTGTCTTACATTTTCTGTTTGGCTTTTTCATTGGTTGATGTGCAGTAACACTGTGTTTG TATGATTGCTTGAATGTCAAATATTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00577
         (866 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M1G9|EXTN2_ARATH  Extensin-2 precursor (AtExt2) (Cell w...    35   0.21 
sp|P18616|RPB1_ARATH  DNA-directed RNA polymerase II largest...    33   1.0  
sp|Q49378|P32_MYCGA  P32 adhesin (Cytadhesin P32)                  32   2.3  
sp|P08775|RPB1_MOUSE  DNA-directed RNA polymerase II largest...    32   3.0  
sp|P13983|EXTN_TOBAC  Extensin precursor (Cell wall hydroxyp...    32   3.0  
sp|P24928|RPB1_HUMAN  DNA-directed RNA polymerase II largest...    32   3.0  
sp|P11414|RPB1_CRIGR  DNA-directed RNA polymerase II largest...    32   3.0  
sp|Q9FS16|EXTN3_ARATH  Extensin-3 precursor (AtExt3) (AtExt5)      31   3.9  
sp|P39599|YWCA_BACSU  Putative symporter ywcA                      31   5.1  
sp|Q92258|GRISA_PODAN  GRISEA protein (MAC1 homolog)               31   5.1

>sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich
           glycoprotein 1) (HRGP1)
          Length = 743

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
 Frame = +3

Query: 123 PPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSAN 302
           PPT  P+   YY  PP     S SP  PY    P +          Y  +P  P +YS+ 
Sbjct: 407 PPTYSPSPKVYYKSPPPPYVYS-SPPPPYYSPSPKV----------YYKSPPPPYVYSSP 455

Query: 303 YPSY-------FYHSPPMSAPGFIYS 359
            P Y       +Y SPP   P ++YS
Sbjct: 456 PPPYYSPSPKVYYKSPP---PPYVYS 478


 Score = 34.3 bits (77), Expect = 0.46
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
           YY   P+++  SP P Y Y    P  +    +    Y  +P  P +YS+  P Y      
Sbjct: 559 YYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 615

Query: 315 -FYHSPPMSAPGFIYS 359
            +Y SPP   P ++YS
Sbjct: 616 VYYKSPP---PPYVYS 628


 Score = 33.9 bits (76), Expect = 0.60
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
           YY   P++   SP P Y Y    P  +    +    Y  +P  P +YS+  P Y      
Sbjct: 384 YYSPSPKVEYKSPPPPYVYSSPPPPTYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 440

Query: 315 -FYHSPPMSAPGFIYS 359
            +Y SPP   P ++YS
Sbjct: 441 VYYKSPP---PPYVYS 453


 Score = 33.5 bits (75), Expect = 0.78
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYFYHSPP 332
           YY   P++   SP P Y Y    P  +    +    Y  +P  P +YS+  P Y+  SP 
Sbjct: 584 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 640

Query: 333 M---SAPGFIYSPT 365
           +   S P   YSP+
Sbjct: 641 VYYKSPPPPYYSPS 654


 Score = 33.1 bits (74), Expect = 1.0
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
           YY   P++   SP P Y Y    P  +    +    Y  +P  P +YS+  P Y      
Sbjct: 434 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 490

Query: 315 -FYHSPPMSAPGFIYS 359
            +Y SPP   P ++YS
Sbjct: 491 VYYKSPP---PPYVYS 503


 Score = 33.1 bits (74), Expect = 1.0
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
           YY   P++   SP P Y Y    P  +    +    Y  +P  P +YS+  P Y      
Sbjct: 459 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 515

Query: 315 -FYHSPPMSAPGFIYS 359
            +Y SPP   P ++YS
Sbjct: 516 VYYKSPP---PPYVYS 528


 Score = 33.1 bits (74), Expect = 1.0
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
           YY   P++   SP P Y Y    P  +    +    Y  +P  P +YS+  P Y+     
Sbjct: 484 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 540

Query: 318 --YHSPPMSAPGFIYS 359
             Y SPP   P ++YS
Sbjct: 541 VHYKSPP---PPYVYS 553


 Score = 31.2 bits (69), Expect = 3.9
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
           YY   P+++  SP P Y Y    P  +    +       +P  P +YS+  P Y+     
Sbjct: 184 YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVE---YKSPPPPYVYSSPPPPYYSPSPK 240

Query: 318 --YHSPPMSAPGFIYS 359
             Y SPP   P ++YS
Sbjct: 241 VDYKSPP---PPYVYS 253


 Score = 31.2 bits (69), Expect = 3.9
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIW-----MSVQQCANGYILTPVTPDIYSANYPSYF 317
           YY   P+++  SP P Y Y    P  +     +  +     Y+     P  YS + P  +
Sbjct: 534 YYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYNSPPPPYYSPS-PKVY 592

Query: 318 YHSPPMSAPGFIYS 359
           Y SPP   P ++YS
Sbjct: 593 YKSPP---PPYVYS 603


 Score = 30.8 bits (68), Expect = 5.1
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
           YY   P+++  SP P Y Y    P  +    +       +P  P +YS+  P Y+     
Sbjct: 109 YYSPSPKVDYKSPPPPYVYNSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 165

Query: 318 --YHSPPMSAPGFIYS 359
             Y SPP   P ++YS
Sbjct: 166 VEYKSPP---PPYVYS 178


 Score = 30.8 bits (68), Expect = 5.1
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
           YY   P+++  SP P Y Y    P  +    +       +P  P +YS+  P Y+     
Sbjct: 234 YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 290

Query: 318 --YHSPPMSAPGFIYS 359
             Y SPP   P ++YS
Sbjct: 291 VDYKSPP---PPYVYS 303


 Score = 30.8 bits (68), Expect = 5.1
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
           YY   P+++  SP P Y Y    P  +    +       +P  P +YS+  P Y+     
Sbjct: 284 YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 340

Query: 318 --YHSPPMSAPGFIYS 359
             Y SPP   P ++YS
Sbjct: 341 VDYKSPP---PPYVYS 353


 Score = 30.8 bits (68), Expect = 5.1
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
           YY   P+++  SP P Y Y    P  +    +       +P  P +YS+  P Y+     
Sbjct: 334 YYSPSPKVDYKSPPPPYVYSSPPPPTYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 390

Query: 318 --YHSPPMSAPGFIYS 359
             Y SPP   P ++YS
Sbjct: 391 VEYKSPP---PPYVYS 403


 Score = 30.4 bits (67), Expect = 6.6
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
 Frame = +3

Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
           YY   P++   SP P Y Y    P  +    +       +P  P +YS+  P Y+     
Sbjct: 159 YYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 215

Query: 318 --YHSPPMSAPGFIYS 359
             Y SPP   P ++YS
Sbjct: 216 VEYKSPP---PPYVYS 228

>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest subunit
          Length = 1840

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
 Frame = +3

Query: 111  SQSYPPTE---FPNYMGYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYILT 272
            S SY PT     P   GY    P  +  SPS  PT P Y  Q      S+    +   L+
Sbjct: 1689 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLS 1748

Query: 273  PVTP-----DIYSANYPSYFYHSPPMSAPGFIYSPT 365
            P +P       YS   PSY   SP  S     YSP+
Sbjct: 1749 PASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPS 1784


 Score = 32.0 bits (71), Expect = 2.3
 Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +3

Query: 126  PTEFPNYMGYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYILTPVTPDIYS 296
            PT  P+  GY    P  +  SPS  PT P Y    P    S    +  Y  +P +P  YS
Sbjct: 1578 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY--SPTSPS-YS 1630

Query: 297  ANYPSYFYHSPPMSAPGFIYSPT 365
               PSY   SP  S     YSPT
Sbjct: 1631 PTSPSYSPTSPAYSPTSPAYSPT 1653


 Score = 30.8 bits (68), Expect = 5.1
 Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
 Frame = +3

Query: 111  SQSYPPTEFPNYMGYYMVPPEMNGISP--SPTYP-YEHQMPLIWMSVQQCANGYILTPVT 281
            S S  P   P+  GY    P  +  SP  SPT P Y    P    +    + GY  +P +
Sbjct: 1538 SPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSP----TYSPSSPGY--SPTS 1591

Query: 282  PDIYSANYPSYFYHSPPMSAPGFIYSPT 365
            P  YS   PSY   SP  S     YSPT
Sbjct: 1592 P-AYSPTSPSYSPTSPSYSPTSPSYSPT 1618

>sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32)
          Length = 294

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 123 PPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMP 224
           PP +     G+  +PP+M G+ P P +P  +QMP
Sbjct: 197 PPNQMGMRPGFNQMPPQMGGMPPRPNFP--NQMP 228

>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
 Frame = +3

Query: 111  SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
            S SY PT  PNY      Y    P  +  SPS  PT P Y    P    S    +  Y  
Sbjct: 1626 SPSYSPTS-PNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1678

Query: 270  TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
            +P +P  YS   PSY   SP  S     YSPT
Sbjct: 1679 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1709


 Score = 30.0 bits (66), Expect = 8.7
 Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
 Frame = +3

Query: 108  RSQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYI 266
            +S SY PT  P+Y      Y    P  +  SPS  PT P Y    P    S    +  Y 
Sbjct: 1611 QSPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY- 1664

Query: 267  LTPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
             +P +P  YS   PSY   SP  S     YSPT
Sbjct: 1665 -SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1695

>sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyproline-rich glycoprotein)
          Length = 620

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +3

Query: 111 SQSYPPTEFPNYMGYYMVPPEMNGISPSPTY--PYEHQMPLIWMSVQQCANGYILTPVTP 284
           S S PPT  P +       P     SP PTY  P    +PL    +       + +P  P
Sbjct: 306 SPSPPPTPTPTFS------PPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPP-VYSPPPP 358

Query: 285 DIYSANYPSYFYHSPPMSAPGFIYSP 362
             YS   P+Y    PP S P   +SP
Sbjct: 359 PSYSPPPPTYLPPPPPSSPPPPSFSP 384


 Score = 30.8 bits (68), Expect = 5.1
 Identities = 27/89 (30%), Positives = 31/89 (34%)
 Frame = +3

Query: 108 RSQSYPPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPD 287
           R Q  PPT        Y  PP     SP P+  Y    P            Y   P +P 
Sbjct: 257 RRQPQPPT--------YSPPPPAYAQSPQPSPTYSPPPPT-----------YSPPPPSP- 296

Query: 288 IYSANYPSYFYHSPPMSAPGFIYSPTVFS 374
           IYS   P+Y    PP   P F   P  +S
Sbjct: 297 IYSPPPPAYSPSPPPTPTPTFSPPPPAYS 325

>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
 Frame = +3

Query: 111  SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
            S SY PT  PNY      Y    P  +  SPS  PT P Y    P    S    +  Y  
Sbjct: 1626 SPSYSPTS-PNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1678

Query: 270  TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
            +P +P  YS   PSY   SP  S     YSPT
Sbjct: 1679 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1709


 Score = 30.0 bits (66), Expect = 8.7
 Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
 Frame = +3

Query: 108  RSQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYI 266
            +S SY PT  P+Y      Y    P  +  SPS  PT P Y    P    S    +  Y 
Sbjct: 1611 QSPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY- 1664

Query: 267  LTPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
             +P +P  YS   PSY   SP  S     YSPT
Sbjct: 1665 -SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1695

>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 467

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
 Frame = +3

Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
           S SY PT  PNY      Y    P  +  SPS  PT P Y    P    S    +  Y  
Sbjct: 123 SPSYSPTS-PNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 175

Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
           +P +P  YS   PSY   SP  S     YSPT
Sbjct: 176 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 206


 Score = 30.0 bits (66), Expect = 8.7
 Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
 Frame = +3

Query: 108 RSQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYI 266
           +S SY PT  P+Y      Y    P  +  SPS  PT P Y    P    S    +  Y 
Sbjct: 108 QSPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY- 161

Query: 267 LTPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
            +P +P  YS   PSY   SP  S     YSPT
Sbjct: 162 -SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 192

>sp|Q9FS16|EXTN3_ARATH Extensin-3 precursor (AtExt3) (AtExt5)
          Length = 427

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 165 PPEMNGISPSPTYPYEHQMPL-IWMSVQQCANGYILTPVTPDIYSANYPSYFYHSPPMSA 341
           PP+ + +  SP  P +H  P  ++ S       Y+     P +   + P   YHSPP   
Sbjct: 335 PPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPV-YHSPPPPK 393

Query: 342 PGFIYSPTVFSDVHH 386
             ++Y       VHH
Sbjct: 394 EKYVYKSPPPPPVHH 408

>sp|P39599|YWCA_BACSU Putative symporter ywcA
          Length = 516

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 228 IWMSVQQCANGYILTPVTPDIYSANYPSYFYHSP--PMSAPGFIYSPTVFSDVHHTTVEN 401
           +W S+    +  +L  ++P ++     + F   P  P+S PG I  P  F      TV +
Sbjct: 431 LWGSLTGLISALVLVSMSPSVWDPAGGAIFTGDPLIPLSNPGIISIPLGFLGAWLGTVLS 490

Query: 402 GDKSNDNLSVSELK 443
            DK+ D  + +E++
Sbjct: 491 SDKTIDEDTFAEIQ 504

>sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog)
          Length = 597

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 123 PPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMP 224
           PP +F   MGY M PP M    P P YP   Q+P
Sbjct: 175 PPPDFGGPMGYNM-PPSMPPHMPPPHYPPHIQIP 207

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,547,770
Number of Sequences: 369166
Number of extensions: 2021461
Number of successful extensions: 5763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5626
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00577

Planaria EST Database

DrC_00577

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail