Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F15
(504 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35580|MYH10_HUMAN Myosin-10 (Myosin heavy chain, nonmus... 30 4.3
sp|Q10201|YBX7_SCHPO Hypothetical protein C17D1.07c in chro... 29 5.6
sp|P40850|MKT1_YEAST Protein MKT1 29 7.3
sp|P53254|UTP22_YEAST Nucleolar protein UTP22 29 7.3
sp|Q61879|MYH10_MOUSE Myosin-10 (Myosin heavy chain, nonmus... 28 9.5
sp|Q9JLT0|MYH10_RAT Myosin-10 (Myosin heavy chain, nonmuscl... 28 9.5
sp|Q04004|PLP1_YEAST Phosducin-like protein 1 28 9.5
sp|Q68XX8|ACKA_RICTY Acetate kinase (Acetokinase) 28 9.5
sp|Q86YH2|SUHW2_HUMAN Suppressor of hairy wing homolog 2 (5... 28 9.5
>sp|P35580|MYH10_HUMAN Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 29.6 bits (65), Expect = 4.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 TVFSDVHHTTVENGD-KSNDNLSVSELKKVLPEETNNHSNSIDD 133
T D TT + ++ V+ELKK L EET NH I D
Sbjct: 1153 TELEDTLDTTAAQQELRTKREQEVAELKKALEEETKNHEAQIQD 1196
>sp|Q10201|YBX7_SCHPO Hypothetical protein C17D1.07c in chromosome II
Length = 962
Score = 29.3 bits (64), Expect = 5.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 68 SVSELKKVLPEETNNHSNSIDDY 136
SV E KK L EETNN ++DD+
Sbjct: 66 SVHEAKKWLEEETNNEYQNLDDF 88
>sp|P40850|MKT1_YEAST Protein MKT1
Length = 830
Score = 28.9 bits (63), Expect = 7.3
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 2 PTVFSDVHHTTVENGDKSNDNLSVSELKKVLPEETNNHSNSIDDYASEETAFGSPNS 172
P++F ++H V+ S+SE + N SN D+ SE+ F PNS
Sbjct: 504 PSMFETINHLIVKTETSDEKEFSISEFITTI----NGSSNMAKDFISEKVIF--PNS 554
>sp|P53254|UTP22_YEAST Nucleolar protein UTP22
Length = 1237
Score = 28.9 bits (63), Expect = 7.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 29 TTVENGDKSNDNLSVSELKKVLPEETNNHSNS 124
+T +NG K ND+ S + ++ +PE+ N+ S++
Sbjct: 29 STTDNGSKENDHSSQAINERTVPEQENDESDT 60
>sp|Q61879|MYH10_MOUSE Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 28.5 bits (62), Expect = 9.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 TVFSDVHHTTVENGD-KSNDNLSVSELKKVLPEETNNHSNSIDD 133
T D TT + ++ V+ELKK L +ET NH I D
Sbjct: 1153 TELEDTLDTTAAQQELRTKREQEVAELKKALEDETKNHEAQIQD 1196
>sp|Q9JLT0|MYH10_RAT Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle myosin heavy
chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin
heavy chain, type B) (Nonmuscle myosin heavy chain-B)
(NMMHC-B)
Length = 1976
Score = 28.5 bits (62), Expect = 9.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 TVFSDVHHTTVENGD-KSNDNLSVSELKKVLPEETNNHSNSIDD 133
T D TT + ++ V+ELKK L +ET NH I D
Sbjct: 1153 TELEDTLDTTAAQQELRTKREQEVAELKKALEDETKNHEAQIQD 1196
>sp|Q04004|PLP1_YEAST Phosducin-like protein 1
Length = 230
Score = 28.5 bits (62), Expect = 9.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 26 HTTVENGDKSNDNLSVSELKKVLPEETNNHSNSIDDYASE 145
HTTV++ DKS+ ++ EL L E + + Y SE
Sbjct: 21 HTTVDSDDKSSGEENLDELLNELDRELDEDHEFLSAYRSE 60
>sp|Q68XX8|ACKA_RICTY Acetate kinase (Acetokinase)
Length = 385
Score = 28.5 bits (62), Expect = 9.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +1
Query: 232 LSANYFSLHLKS------PTKTFLTKIHWNCSACVTKNY*TISPMIAFAVL 366
LS Y S H K PTKT + + S C KN +++ + F+VL
Sbjct: 177 LSYQYVSSHFKEITMEDLPTKTIIAHLGSGSSLCAIKNGLSLTSSMGFSVL 227
>sp|Q86YH2|SUHW2_HUMAN Suppressor of hairy wing homolog 2 (5'OY11.1) (Zinc finger protein
632)
Length = 543
Score = 28.5 bits (62), Expect = 9.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 504 KYLTFKQSYKHSVTAHQPMKKPNR 433
++LTFK+ +H HQ KKP +
Sbjct: 468 QFLTFKEKMEHKTQCHQMFKKPKQ 491
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,743,701
Number of Sequences: 369166
Number of extensions: 1028961
Number of successful extensions: 2778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2777
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)