Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B09
(770 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell w... 35 0.17
sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest... 33 0.86
sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32) 32 1.9
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest... 32 2.5
sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyp... 32 2.5
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest... 32 2.5
sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest... 32 2.5
sp|Q9FS16|EXTN3_ARATH Extensin-3 precursor (AtExt3) (AtExt5) 31 3.3
sp|P39599|YWCA_BACSU Putative symporter ywcA 31 4.3
sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog) 31 4.3
>sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich
glycoprotein 1) (HRGP1)
Length = 743
Score = 35.4 bits (80), Expect = 0.17
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Frame = +3
Query: 123 PPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSAN 302
PPT P+ YY PP S SP PY P + Y +P P +YS+
Sbjct: 407 PPTYSPSPKVYYKSPPPPYVYS-SPPPPYYSPSPKV----------YYKSPPPPYVYSSP 455
Query: 303 YPSY-------FYHSPPMSAPGFIYS 359
P Y +Y SPP P ++YS
Sbjct: 456 PPPYYSPSPKVYYKSPP---PPYVYS 478
Score = 34.3 bits (77), Expect = 0.38
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
YY P+++ SP P Y Y P + + Y +P P +YS+ P Y
Sbjct: 559 YYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 615
Query: 315 -FYHSPPMSAPGFIYS 359
+Y SPP P ++YS
Sbjct: 616 VYYKSPP---PPYVYS 628
Score = 33.9 bits (76), Expect = 0.50
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
YY P++ SP P Y Y P + + Y +P P +YS+ P Y
Sbjct: 384 YYSPSPKVEYKSPPPPYVYSSPPPPTYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 440
Query: 315 -FYHSPPMSAPGFIYS 359
+Y SPP P ++YS
Sbjct: 441 VYYKSPP---PPYVYS 453
Score = 33.5 bits (75), Expect = 0.66
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYFYHSPP 332
YY P++ SP P Y Y P + + Y +P P +YS+ P Y+ SP
Sbjct: 584 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 640
Query: 333 M---SAPGFIYSPT 365
+ S P YSP+
Sbjct: 641 VYYKSPPPPYYSPS 654
Score = 33.1 bits (74), Expect = 0.86
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
YY P++ SP P Y Y P + + Y +P P +YS+ P Y
Sbjct: 434 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 490
Query: 315 -FYHSPPMSAPGFIYS 359
+Y SPP P ++YS
Sbjct: 491 VYYKSPP---PPYVYS 503
Score = 33.1 bits (74), Expect = 0.86
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSY------ 314
YY P++ SP P Y Y P + + Y +P P +YS+ P Y
Sbjct: 459 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 515
Query: 315 -FYHSPPMSAPGFIYS 359
+Y SPP P ++YS
Sbjct: 516 VYYKSPP---PPYVYS 528
Score = 33.1 bits (74), Expect = 0.86
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
YY P++ SP P Y Y P + + Y +P P +YS+ P Y+
Sbjct: 484 YYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKV---YYKSPPPPYVYSSPPPPYYSPSPK 540
Query: 318 --YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 541 VHYKSPP---PPYVYS 553
Score = 31.2 bits (69), Expect = 3.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
YY P+++ SP P Y Y P + + +P P +YS+ P Y+
Sbjct: 184 YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVE---YKSPPPPYVYSSPPPPYYSPSPK 240
Query: 318 --YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 241 VDYKSPP---PPYVYS 253
Score = 31.2 bits (69), Expect = 3.3
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIW-----MSVQQCANGYILTPVTPDIYSANYPSYF 317
YY P+++ SP P Y Y P + + + Y+ P YS + P +
Sbjct: 534 YYSPSPKVHYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPPPYVYNSPPPPYYSPS-PKVY 592
Query: 318 YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 593 YKSPP---PPYVYS 603
Score = 30.8 bits (68), Expect = 4.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
YY P+++ SP P Y Y P + + +P P +YS+ P Y+
Sbjct: 109 YYSPSPKVDYKSPPPPYVYNSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 165
Query: 318 --YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 166 VEYKSPP---PPYVYS 178
Score = 30.8 bits (68), Expect = 4.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
YY P+++ SP P Y Y P + + +P P +YS+ P Y+
Sbjct: 234 YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 290
Query: 318 --YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 291 VDYKSPP---PPYVYS 303
Score = 30.8 bits (68), Expect = 4.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
YY P+++ SP P Y Y P + + +P P +YS+ P Y+
Sbjct: 284 YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 340
Query: 318 --YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 341 VDYKSPP---PPYVYS 353
Score = 30.8 bits (68), Expect = 4.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
YY P+++ SP P Y Y P + + +P P +YS+ P Y+
Sbjct: 334 YYSPSPKVDYKSPPPPYVYSSPPPPTYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 390
Query: 318 --YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 391 VEYKSPP---PPYVYS 403
Score = 30.4 bits (67), Expect = 5.6
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Frame = +3
Query: 153 YYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPDIYSANYPSYF----- 317
YY P++ SP P Y Y P + + +P P +YS+ P Y+
Sbjct: 159 YYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVD---YKSPPPPYVYSSPPPPYYSPSPK 215
Query: 318 --YHSPPMSAPGFIYS 359
Y SPP P ++YS
Sbjct: 216 VEYKSPP---PPYVYS 228
Score = 29.6 bits (65), Expect = 9.5
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Frame = +3
Query: 123 PPTEFPNYMGYYMVPPEMNGISPSPTYPYE---HQMPLIWMSVQQCANGYILTPVTPDIY 293
PP P+ YY PP SPSP Y+ H + C +P +Y
Sbjct: 632 PPYYSPSPKVYYKSPPPPY-YSPSPKVYYKSPPHPHVCVCPPPPPC-----YSPSPKVVY 685
Query: 294 SANYPSYFYHSPPMSAPGFIYSPTVF 371
+ P Y Y+SPP P + SP V+
Sbjct: 686 KSPPPPYVYNSPP--PPYYSPSPKVY 709
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest subunit
Length = 1840
Score = 33.1 bits (74), Expect = 0.86
Identities = 32/96 (33%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Frame = +3
Query: 111 SQSYPPTE---FPNYMGYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYILT 272
S SY PT P GY P + SPS PT P Y Q S+ + L+
Sbjct: 1689 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLS 1748
Query: 273 PVTP-----DIYSANYPSYFYHSPPMSAPGFIYSPT 365
P +P YS PSY SP S YSP+
Sbjct: 1749 PASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPS 1784
Score = 32.0 bits (71), Expect = 1.9
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +3
Query: 126 PTEFPNYMGYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYILTPVTPDIYS 296
PT P+ GY P + SPS PT P Y P S + Y +P +P YS
Sbjct: 1578 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY--SPTSPS-YS 1630
Query: 297 ANYPSYFYHSPPMSAPGFIYSPT 365
PSY SP S YSPT
Sbjct: 1631 PTSPSYSPTSPAYSPTSPAYSPT 1653
Score = 30.8 bits (68), Expect = 4.3
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +3
Query: 111 SQSYPPTEFPNYMGYYMVPPEMNGISP--SPTYP-YEHQMPLIWMSVQQCANGYILTPVT 281
S S P P+ GY P + SP SPT P Y P + + GY +P +
Sbjct: 1538 SPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSP----TYSPSSPGY--SPTS 1591
Query: 282 PDIYSANYPSYFYHSPPMSAPGFIYSPT 365
P YS PSY SP S YSPT
Sbjct: 1592 P-AYSPTSPSYSPTSPSYSPTSPSYSPT 1618
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISP--SPTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SP SPT P Y P S + Y
Sbjct: 1619 SPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP----SYSPTSPSY-- 1671
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1672 SPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPT 1702
>sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32)
Length = 294
Score = 32.0 bits (71), Expect = 1.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 123 PPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMP 224
PP + G+ +PP+M G+ P P +P +QMP
Sbjct: 197 PPNQMGMRPGFNQMPPQMGGMPPRPNFP--NQMP 228
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 31.6 bits (70), Expect = 2.5
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT PNY Y P + SPS PT P Y P S + Y
Sbjct: 1626 SPSYSPTS-PNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1678
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1679 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1709
Score = 30.0 bits (66), Expect = 7.3
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = +3
Query: 108 RSQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYI 266
+S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1611 QSPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY- 1664
Query: 267 LTPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1665 -SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1695
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1640 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1692
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1693 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1723
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1647 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1699
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1700 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1730
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1654 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1706
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1707 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1737
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1661 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1713
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1714 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1744
>sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyproline-rich glycoprotein)
Length = 620
Score = 31.6 bits (70), Expect = 2.5
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = +3
Query: 111 SQSYPPTEFPNYMGYYMVPPEMNGISPSPTY--PYEHQMPLIWMSVQQCANGYILTPVTP 284
S S PPT P + P SP PTY P +PL + + +P P
Sbjct: 306 SPSPPPTPTPTFS------PPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPP-VYSPPPP 358
Query: 285 DIYSANYPSYFYHSPPMSAPGFIYSP 362
YS P+Y PP S P +SP
Sbjct: 359 PSYSPPPPTYLPPPPPSSPPPPSFSP 384
Score = 30.8 bits (68), Expect = 4.3
Identities = 27/89 (30%), Positives = 31/89 (34%)
Frame = +3
Query: 108 RSQSYPPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMPLIWMSVQQCANGYILTPVTPD 287
R Q PPT Y PP SP P+ Y P Y P +P
Sbjct: 257 RRQPQPPT--------YSPPPPAYAQSPQPSPTYSPPPPT-----------YSPPPPSP- 296
Query: 288 IYSANYPSYFYHSPPMSAPGFIYSPTVFS 374
IYS P+Y PP P F P +S
Sbjct: 297 IYSPPPPAYSPSPPPTPTPTFSPPPPAYS 325
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 31.6 bits (70), Expect = 2.5
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT PNY Y P + SPS PT P Y P S + Y
Sbjct: 1626 SPSYSPTS-PNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1678
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1679 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1709
Score = 30.0 bits (66), Expect = 7.3
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = +3
Query: 108 RSQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYI 266
+S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1611 QSPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY- 1664
Query: 267 LTPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1665 -SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1695
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1640 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1692
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1693 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1723
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1647 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1699
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1700 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1730
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1654 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1706
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1707 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1737
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 1661 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 1713
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 1714 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 1744
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 467
Score = 31.6 bits (70), Expect = 2.5
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT PNY Y P + SPS PT P Y P S + Y
Sbjct: 123 SPSYSPTS-PNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 175
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 176 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 206
Score = 30.0 bits (66), Expect = 7.3
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = +3
Query: 108 RSQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYI 266
+S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 108 QSPSYSPTS-PSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY- 161
Query: 267 LTPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 162 -SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 192
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 137 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 189
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 190 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 220
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 144 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 196
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 197 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 227
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 151 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 203
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 204 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 234
Score = 29.6 bits (65), Expect = 9.5
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = +3
Query: 111 SQSYPPTEFPNYM----GYYMVPPEMNGISPS--PTYP-YEHQMPLIWMSVQQCANGYIL 269
S SY PT P+Y Y P + SPS PT P Y P S + Y
Sbjct: 158 SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSY-- 210
Query: 270 TPVTPDIYSANYPSYFYHSPPMSAPGFIYSPT 365
+P +P YS PSY SP S YSPT
Sbjct: 211 SPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPT 241
>sp|Q9FS16|EXTN3_ARATH Extensin-3 precursor (AtExt3) (AtExt5)
Length = 427
Score = 31.2 bits (69), Expect = 3.3
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 165 PPEMNGISPSPTYPYEHQMPL-IWMSVQQCANGYILTPVTPDIYSANYPSYFYHSPPMSA 341
PP+ + + SP P +H P ++ S Y+ P + + P YHSPP
Sbjct: 335 PPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPV-YHSPPPPK 393
Query: 342 PGFIYSPTVFSDVHH 386
++Y VHH
Sbjct: 394 EKYVYKSPPPPPVHH 408
>sp|P39599|YWCA_BACSU Putative symporter ywcA
Length = 516
Score = 30.8 bits (68), Expect = 4.3
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 228 IWMSVQQCANGYILTPVTPDIYSANYPSYFYHSP--PMSAPGFIYSPTVFSDVHHTTVEN 401
+W S+ + +L ++P ++ + F P P+S PG I P F TV +
Sbjct: 431 LWGSLTGLISALVLVSMSPSVWDPAGGAIFTGDPLIPLSNPGIISIPLGFLGAWLGTVLS 490
Query: 402 GDKSNDNLSVSELK 443
DK+ D + +E++
Sbjct: 491 SDKTIDEDTFAEIQ 504
>sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog)
Length = 597
Score = 30.8 bits (68), Expect = 4.3
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 123 PPTEFPNYMGYYMVPPEMNGISPSPTYPYEHQMP 224
PP +F MGY M PP M P P YP Q+P
Sbjct: 175 PPPDFGGPMGYNM-PPSMPPHMPPPHYPPHIQIP 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,091,078
Number of Sequences: 369166
Number of extensions: 1749315
Number of successful extensions: 5012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4876
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)