Planaria EST Database

DrC_00568

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00568
         (825 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P81432|SYD_BUCAP  Aspartyl-tRNA synthetase (Aspartate--tR...    33   1.2  
sp|P45995|HIFE2_HAEIN  Minor fimbrial subunit hifE precursor       30   8.1  

>sp|P81432|SYD_BUCAP Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
          Length = 584

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -1

Query: 198 VKINVISTSSREI-CSINTIIDINLCKQIYLKTNSKNY**LEHSIIKII*NVEKILNK 28
           +KIN I    ++I  SI  I+D N  + I  KTN+KN      +I+ ++ + EKI+NK
Sbjct: 350 IKINKIENRFQDIQSSIKNILDKNTLENILRKTNAKN-----GNILFLLADEEKIVNK 402

>sp|P45995|HIFE2_HAEIN Minor fimbrial subunit hifE precursor
          Length = 437

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
 Frame = +1

Query: 238 NSPNTTVKFINNWIKLKSE------------ASNKCPNIDLNII--TVVNGLAKDNKVST 375
           N+P  ++   NNWI  KS              SN CP + L ++    +  L    K ++
Sbjct: 87  NAPTNSLAPFNNWINTKSAVELGYSFAGITCTSNPCPTMKLPLLFHPDLTNLTPPGKKNS 146

Query: 376 TCGGEIEKLEQTFSNFSSFVIKLDTK-GLDDQDSKVNMN 489
             GGEI KL    +   SF I + T   LD  ++K N +
Sbjct: 147 D-GGEIFKLHNESNLGVSFQIGVKTNTSLDWVNAKNNFS 184

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,811,832
Number of Sequences: 369166
Number of extensions: 1241931
Number of successful extensions: 2893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2893
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00568

  1. Dr_sW_014_M05
  2. Dr_sW_004_C10