Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_C10
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45995|HIFE2_HAEIN Minor fimbrial subunit hifE precursor 30 5.1
sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 (C... 30 6.7
sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 ... 30 6.7
sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 ... 30 6.7
>sp|P45995|HIFE2_HAEIN Minor fimbrial subunit hifE precursor
Length = 437
Score = 30.4 bits (67), Expect = 5.1
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Frame = +2
Query: 158 NSPNTTVKFINNWIKLKSE------------ASNKCPNIDLNII--TVVNGLAKDNKVST 295
N+P ++ NNWI KS SN CP + L ++ + L K ++
Sbjct: 87 NAPTNSLAPFNNWINTKSAVELGYSFAGITCTSNPCPTMKLPLLFHPDLTNLTPPGKKNS 146
Query: 296 TCGGEIEKLEHAFSNFSSFVIKLDTK-GLDDQDSKVNMN 409
GGEI KL + + SF I + T LD ++K N +
Sbjct: 147 D-GGEIFKLHNESNLGVSFQIGVKTNTSLDWVNAKNNFS 184
>sp|Q05140|AP180_RAT Clathrin coat assembly protein AP180 (Clathrin coat-associated
protein AP180) (91 kDa synaptosomal-associated protein)
Length = 915
Score = 30.0 bits (66), Expect = 6.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 339 LENACSNFSISPPQVVDTLLSFANPLTTVIIFKSIF--GHLLDASDFNFIQLLINFTVVF 166
L A + +++ PQ+ DTL A + V++FK++ HL+ + FIQ L + +F
Sbjct: 45 LIQATNETNVNIPQMADTLFERATNSSWVVVFKALVTTHHLMVHGNERFIQYLASRNTLF 104
>sp|Q61548|AP180_MOUSE Clathrin coat assembly protein AP180 (Clathrin coat-associated
protein AP180) (91 kDa synaptosomal-associated protein)
(Phosphoprotein F1-20)
Length = 901
Score = 30.0 bits (66), Expect = 6.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 339 LENACSNFSISPPQVVDTLLSFANPLTTVIIFKSIF--GHLLDASDFNFIQLLINFTVVF 166
L A + +++ PQ+ DTL A + V++FK++ HL+ + FIQ L + +F
Sbjct: 45 LIQATNETNVNIPQMADTLFERATNSSWVVVFKALVTTHHLMVHGNERFIQYLASRNTLF 104
>sp|O60641|AP180_HUMAN Clathrin coat assembly protein AP180 (Clathrin coat-associated
protein AP180) (91 kDa synaptosomal-associated protein)
Length = 907
Score = 30.0 bits (66), Expect = 6.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 339 LENACSNFSISPPQVVDTLLSFANPLTTVIIFKSIF--GHLLDASDFNFIQLLINFTVVF 166
L A + +++ PQ+ DTL A + V++FK++ HL+ + FIQ L + +F
Sbjct: 45 LIQATNETNVNIPQMADTLFERATNSSWVVVFKALVTTHHLMVHGNERFIQYLASRNTLF 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,674,283
Number of Sequences: 369166
Number of extensions: 1187083
Number of successful extensions: 2723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2723
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)