Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M05
(824 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P81432|SYD_BUCAP Aspartyl-tRNA synthetase (Aspartate--tR... 33 1.2
sp|P45995|HIFE2_HAEIN Minor fimbrial subunit hifE precursor 30 8.1
>sp|P81432|SYD_BUCAP Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 584
Score = 32.7 bits (73), Expect = 1.2
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -3
Query: 198 VKINVISTSSREI-CSINTIIDINLCKQIYLKTNSKNY**LEHSIIKII*NVEKILNK 28
+KIN I ++I SI I+D N + I KTN+KN +I+ ++ + EKI+NK
Sbjct: 350 IKINKIENRFQDIQSSIKNILDKNTLENILRKTNAKN-----GNILFLLADEEKIVNK 402
>sp|P45995|HIFE2_HAEIN Minor fimbrial subunit hifE precursor
Length = 437
Score = 30.0 bits (66), Expect = 8.1
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Frame = +1
Query: 238 NSPNTTVKFINNWIKLKSE------------ASNKCPNIDLNII--TVVNGLAKDNKVST 375
N+P ++ NNWI KS SN CP + L ++ + L K ++
Sbjct: 87 NAPTNSLAPFNNWINTKSAVELGYSFAGITCTSNPCPTMKLPLLFHPDLTNLTPPGKKNS 146
Query: 376 TCGGEIEKLEQTFSNFSSFVIKLDTK-GLDDQDSKVNMN 489
GGEI KL + SF I + T LD ++K N +
Sbjct: 147 D-GGEIFKLHNESNLGVSFQIGVKTNTSLDWVNAKNNFS 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,954,470
Number of Sequences: 369166
Number of extensions: 1246299
Number of successful extensions: 2904
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)