Planarian EST Database

DrC_00561

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00561 CTACTCCGGAATTTTGAAGAAGAACAATGGTCAAAGCAACAACTATTAAGATGCTTCCAG TTAAGAAGACCGACAAAAGTATGACTCTCACCGCTTTCGCTGAATATCCCTCCGAGGAAG ACGCTATTTTCGATTACGACAACAAACACGGTGTCGAAATCGACGGGATGCTCATTAATG TCAAGTTTCAAAGCAAGTCCAACACAAATATAAAGAAAGGAATCTCCTGGGATAAAACTG CATTGCAAGTTGTTGGAATAAACAAGGCGATGAGTAATGACGATATGAAGAAGTTGTTCC CGCAAGCATTGAAGATCAACTGGAAAGTTGGGGATCAAGTCGCTCATATCAACTACGAGA ACGAGGCGGATTGCTCGGTCGATTATTCGAATTCCGTCAAGAACAAGCCTCATGGGAACA TGAAGATATTCTACAAATGTTTGATGCACAAATCTGGTGGAAACGAGCCGAGAAATAACC TGGGGAAAATCGCGGGAAATAACAACAAGAAAGAATTTAGAGGAAAAAAGGAATTTGCAA AGAAAGAAGAAAATAAGGAAAACACAAAGAAAGAAAGCATTGCAATAATGAAGAAAGGAA ACAAAGAAGGTAAAAATGAGAAAAAGAATTTCAAACCGAAACAAAAGTTTAATGGAAAAA AAGCGACTGGAGCAAAGAAAGAGTTTCCTGGAGTGAAGAAGACAAATTTCAAACCATCAC ATAATAATAAGATGAAATCCAAGAATGGTTCGGAGAAAGATAATACTAGTAATACTAAAT TACATACAGTTGGAAATATTAAAATCGAAGAAAAAATTACCGGCTCTCTTAAAAAGAATA TTGAAAACTTTAAAAAACCATTTATTTCTGGAGAAAAAAATTCAATGAAAACAGAAAAGA AAATTATAAAAGAAAATGTAGTTAATAGTTCGACAAAGAATAAAGATGTCAATATTGAAA CATTTAAATTAGATAAAGGACAAATC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00561
         (986 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15771|NUCL_CHICK  Nucleolin (Protein C23)                      40   0.013
sp|P90648|KMHB_DICDI  Myosin heavy chain kinase B (MHCK B)         37   0.11 
sp|O75417|DPOQ_HUMAN  DNA polymerase theta (DNA polymerase eta)    35   0.33 
sp|P21127|CD2L1_HUMAN  PITSLRE serine/threonine-protein kina...    33   1.6  
sp|P55972|IF2_HELPY  Translation initiation factor IF-2            33   1.6  
sp|Q9UQ88|CD2L2_HUMAN  PITSLRE serine/threonine-protein kina...    33   1.6  
sp|P09757|TETM_UREUR  Tetracycline resistance protein tetM         32   2.1  
sp|Q01844|EWS_HUMAN  RNA-binding protein EWS (EWS oncogene) ...    32   2.1  
sp|P20397|NUCL_XENLA  Nucleolin (Protein C23)                      32   2.8  
sp|Q90ZA1|PARN_XENLA  Poly(A)-specific ribonuclease PARN (Po...    32   2.8

>sp|P15771|NUCL_CHICK Nucleolin (Protein C23)
          Length = 694

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
 Frame = +3

Query: 33  KATTIKMLPVKKTDKSMTLTAFAEYPSEEDAIFDYDNKHGVEIDGMLINVKFQS----KS 200
           KAT+IKM P     +     AF E+P+ EDA    ++ +  EI+G  I ++F S    K 
Sbjct: 483 KATSIKM-PQNNQGRPKGY-AFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG 540

Query: 201 NTNIKKGISWDKTALQVVGINKAMSNDDMKKLF 299
           N N + G +     L V G+++  + + +++ F
Sbjct: 541 NMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 573

>sp|P90648|KMHB_DICDI Myosin heavy chain kinase B (MHCK B)
          Length = 732

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
 Frame = +3

Query: 684 FPGVKKTNFKPSHNNKMKSKNGSEKDNTSNTKLHTVGNIK-IEEKITGSLKKNIEN--FK 854
           FP   + +   ++NN   + N +  +N++N   +     K + E  +GS ++N  +   +
Sbjct: 347 FPDTSERDNNNNNNNNNNNNNNNNNNNSNNNNNNNSSISKSLVEISSGSKERNDRDSPSR 406

Query: 855 KPFISGEKNSMKTEKK--------IIKENVVNSSTKNKDVNIETFKL 971
           + F+S + N++ T K+        + K  ++ ++ K + +N+ET KL
Sbjct: 407 QLFVSNDGNTLNTNKERSKSKSIDLEKPEILINNKKKESINLETIKL 453

>sp|O75417|DPOQ_HUMAN DNA polymerase theta (DNA polymerase eta)
          Length = 1762

 Score = 35.0 bits (79), Expect = 0.33
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
 Frame = +3

Query: 696 KKTNFKPSHN-NKMKSKNGSEKDNTSNTKLHTVGNIK----------IEEKITGSLKKNI 842
           KKT F+ S    K  S +G EKDN ++  L    N            +E  +TGS  KN+
Sbjct: 259 KKTEFRNSGPFAKNVSLSGKEKDNKTSFPLQIKQNCSWNITLTNDNFVEHIVTGSQSKNV 318

Query: 843 ENFKKPFISGEKNSMKTEKKIIKENVVNSSTKNKDV 950
                  +S +   +  E + I E ++ + +KN++V
Sbjct: 319 TCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNV 354

>sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CDC2L1
           (Galactosyltransferase-associated protein kinase
           p58/GTA) (Cell division cycle 2-like protein kinase 1)
           (CLK-1) (CDK11) (p58 CLK-1)
          Length = 795

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 592 RKETKKVKMRKRISNRNKSLMEKKRLEQRKSFLE*RRQISNHHIIIR 732
           RK  ++ KMR++   + +    ++R E+R+   E RR++S HH  +R
Sbjct: 173 RKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMR 219

>sp|P55972|IF2_HELPY Translation initiation factor IF-2
          Length = 944

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
 Frame = +3

Query: 663 ATGAKKEFPGVKKTNFKPSHNNKMKSKNG----SEKDNTSNTKLHTVGNIKIEEKITGSL 830
           A  AKKE   VKK   +   +  +K + G       D   N   ++V   K   K T S 
Sbjct: 183 ANNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDEVENESENSVTESK---KPTQSA 239

Query: 831 KKNIENFKKPFISGEKNSMKTEKKIIKENVVNSSTKNKDVNIE 959
               E+ KK +   +K   K  KK  K     ++  NK   I+
Sbjct: 240 AAIFEDIKKEWQEKDKQEAKKAKKPSKPKATPTAKNNKSHKID 282

>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
           (Galactosyltransferase-associated protein kinase
           p58/GTA) (Cell division cycle 2-like protein kinase 2)
           (CDK11)
          Length = 780

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 592 RKETKKVKMRKRISNRNKSLMEKKRLEQRKSFLE*RRQISNHHIIIR 732
           RK  ++ KMR++   + +    ++R E+R+   E RR++S HH  +R
Sbjct: 161 RKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMR 207

>sp|P09757|TETM_UREUR Tetracycline resistance protein tetM
          Length = 639

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +1

Query: 598 ETKKVKMRKRISNRNKSL---MEKKRLEQRKSFLE*RRQISNHHIIIR*NPRMVRRKIIL 768
           +TK +  RKRI N +  L   +E  + EQR+  L+   +IS+   ++R        +IIL
Sbjct: 329 DTKLLPQRKRIENPHPLLQITVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIIL 388

Query: 769 VILNYIQLEI 798
             L  +Q+E+
Sbjct: 389 SFLGKVQMEV 398

>sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint
           region 1 protein)
          Length = 656

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = +3

Query: 231 DKTALQVVGINKAMSNDDMKKLFPQ--ALKINWKVGDQVAHINYENE-----ADCSVDYS 389
           D +A+ V G+N +++ DD+   F Q   +K+N + G  + HI  + E      D +V Y 
Sbjct: 359 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 418

Query: 390 N 392
           +
Sbjct: 419 D 419

>sp|P20397|NUCL_XENLA Nucleolin (Protein C23)
          Length = 651

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 18  RRTMVKATTIKMLPVKKTDKSMTLTAFAEYPSEEDAIFDYDNKHGVEIDGMLINVKF-QS 194
           R    KAT+I++   +   K     AF E+ S EDA    D+ +  EI+G  I ++F Q 
Sbjct: 432 REVFEKATSIRIPQNQGRAKGF---AFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQG 488

Query: 195 KSNTNIKKGISWDKTALQVVGINKAMSNDDMKKLF 299
                  +G S     L V G+++  + + +K+ F
Sbjct: 489 GGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAF 523

>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN (Polyadenylate-specific
           ribonuclease) (Deadenylating nuclease) (Deadenylation
           nuclease) (parn-A)
          Length = 631

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 693 VKKTNFKPSHNNKMKSKNGSEKDNTSNTKLHTVGNIKIEEKITGSLKKNIENFKKPFISG 872
           +K+  FKP    K+ S  G +  NT++ +LH  G    +  ITG    ++ N+   F+S 
Sbjct: 349 LKEAPFKPP---KVDSAEGFQSYNTASEQLHEAG---YDAYITGLCFISMANYLGSFLSP 402

Query: 873 EKNSMKTEKKIIK 911
            K+ +    KI++
Sbjct: 403 PKDYVSCRSKIVR 415

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,002,475
Number of Sequences: 369166
Number of extensions: 1808388
Number of successful extensions: 6556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6538
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10383318715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00561

Planaria EST Database

DrC_00561

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail