Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_K11
(877 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P90648|KMHB_DICDI Myosin heavy chain kinase B (MHCK B) 37 0.094
sp|O75417|DPOQ_HUMAN DNA polymerase theta (DNA polymerase eta) 35 0.27
sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kina... 33 1.4
sp|P55972|IF2_HELPY Translation initiation factor IF-2 33 1.4
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kina... 33 1.4
sp|P09757|TETM_UREUR Tetracycline resistance protein tetM 32 1.8
sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) ... 32 1.8
sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN (Po... 32 2.3
sp|O15736|TIPD_DICDI Protein tipD 32 3.0
sp|O04005|REHY_ARATH Peroxiredoxin (Thioredoxin peroxidase)... 32 3.0
>sp|P90648|KMHB_DICDI Myosin heavy chain kinase B (MHCK B)
Length = 732
Score = 36.6 bits (83), Expect = 0.094
Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Frame = +2
Query: 575 FPGVKKTNFKPSHNNKMKSKNGSEKDNTSNTKLHTVGNIK-IEEKITGSLKKNIEN--FK 745
FP + + ++NN + N + +N++N + K + E +GS ++N + +
Sbjct: 347 FPDTSERDNNNNNNNNNNNNNNNNNNNSNNNNNNNSSISKSLVEISSGSKERNDRDSPSR 406
Query: 746 KPFISGEKNSMKTEKK--------IIKENVVNSSTKNKDVNIETFKL 862
+ F+S + N++ T K+ + K ++ ++ K + +N+ET KL
Sbjct: 407 QLFVSNDGNTLNTNKERSKSKSIDLEKPEILINNKKKESINLETIKL 453
>sp|O75417|DPOQ_HUMAN DNA polymerase theta (DNA polymerase eta)
Length = 1762
Score = 35.0 bits (79), Expect = 0.27
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Frame = +2
Query: 587 KKTNFKPSHN-NKMKSKNGSEKDNTSNTKLHTVGNIK----------IEEKITGSLKKNI 733
KKT F+ S K S +G EKDN ++ L N +E +TGS KN+
Sbjct: 259 KKTEFRNSGPFAKNVSLSGKEKDNKTSFPLQIKQNCSWNITLTNDNFVEHIVTGSQSKNV 318
Query: 734 ENFKKPFISGEKNSMKTEKKIIKENVVNSSTKNKDV 841
+S + + E + I E ++ + +KN++V
Sbjct: 319 TCQATSVVSEKGRGVAVEAEKINEVLIQNGSKNQNV 354
>sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
(CLK-1) (CDK11) (p58 CLK-1)
Length = 795
Score = 32.7 bits (73), Expect = 1.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 483 RKETKKVKMRKRISNRNKSLMEKKRLEQRKSFLE*RRQISNHHIIIR 623
RK ++ KMR++ + + ++R E+R+ E RR++S HH +R
Sbjct: 173 RKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMR 219
>sp|P55972|IF2_HELPY Translation initiation factor IF-2
Length = 944
Score = 32.7 bits (73), Expect = 1.4
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Frame = +2
Query: 554 ATGAKKEFPGVKKTNFKPSHNNKMKSKNG----SEKDNTSNTKLHTVGNIKIEEKITGSL 721
A AKKE VKK + + +K + G D N ++V K K T S
Sbjct: 183 ANNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDEVENESENSVTESK---KPTQSA 239
Query: 722 KKNIENFKKPFISGEKNSMKTEKKIIKENVVNSSTKNKDVNIE 850
E+ KK + +K K KK K ++ NK I+
Sbjct: 240 AAIFEDIKKEWQEKDKQEAKKAKKPSKPKATPTAKNNKSHKID 282
>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 2)
(CDK11)
Length = 780
Score = 32.7 bits (73), Expect = 1.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 483 RKETKKVKMRKRISNRNKSLMEKKRLEQRKSFLE*RRQISNHHIIIR 623
RK ++ KMR++ + + ++R E+R+ E RR++S HH +R
Sbjct: 161 RKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMR 207
>sp|P09757|TETM_UREUR Tetracycline resistance protein tetM
Length = 639
Score = 32.3 bits (72), Expect = 1.8
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 489 ETKKVKMRKRISNRNKSL---MEKKRLEQRKSFLE*RRQISNHHIIIR*NPRMVRRKIIL 659
+TK + RKRI N + L +E + EQR+ L+ +IS+ ++R +IIL
Sbjct: 329 DTKLLPQRKRIENPHPLLQITVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIIL 388
Query: 660 VILNYIQLEI 689
L +Q+E+
Sbjct: 389 SFLGKVQMEV 398
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint
region 1 protein)
Length = 656
Score = 32.3 bits (72), Expect = 1.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 122 DKTALQVVGINKAMSNDDMKKLFPQ--ALKINWKVGDQVAHINYENE-----ADCSVDYS 280
D +A+ V G+N +++ DD+ F Q +K+N + G + HI + E D +V Y
Sbjct: 359 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 418
Query: 281 N 283
+
Sbjct: 419 D 419
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN (Polyadenylate-specific
ribonuclease) (Deadenylating nuclease) (Deadenylation
nuclease) (parn-A)
Length = 631
Score = 32.0 bits (71), Expect = 2.3
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +2
Query: 584 VKKTNFKPSHNNKMKSKNGSEKDNTSNTKLHTVGNIKIEEKITGSLKKNIENFKKPFISG 763
+K+ FKP K+ S G + NT++ +LH G + ITG ++ N+ F+S
Sbjct: 349 LKEAPFKPP---KVDSAEGFQSYNTASEQLHEAG---YDAYITGLCFISMANYLGSFLSP 402
Query: 764 EKNSMKTEKKIIK 802
K+ + KI++
Sbjct: 403 PKDYVSCRSKIVR 415
>sp|O15736|TIPD_DICDI Protein tipD
Length = 612
Score = 31.6 bits (70), Expect = 3.0
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +2
Query: 587 KKTNFKP-SHNNKMKSKNGSEKDNTSNTKLHTVGNI-----KIEEKITGSLKKNIENFKK 748
KKT +P S ++KM S + S N + T+ + K++E +T S K+N +N
Sbjct: 98 KKTQQQPPSGSSKMDSSSSSSSSNRVSGMGSTIEEMEQKLFKLQEDLTNSYKRNADNASS 157
Query: 749 PFISGEKNSMKTEKKIIKE 805
+ +KN + + KE
Sbjct: 158 ILLLNDKNKDLQNELMSKE 176
>sp|O04005|REHY_ARATH Peroxiredoxin (Thioredoxin peroxidase) (Rehydrin homolog)
Length = 216
Score = 31.6 bits (70), Expect = 3.0
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 47 EIDGMLINVKFQSKSNTNIKKGISWDKTALQVVGINKAMSNDDMKKLFPQALK 205
E+ L ++ SK N I ++W Q V I+ A+S+++ KK+FPQ K
Sbjct: 149 EVLRALDSLLMASKHNNKIATPVNWKPD--QPVVISPAVSDEEAKKMFPQGFK 199
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,829,210
Number of Sequences: 369166
Number of extensions: 1550005
Number of successful extensions: 5761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5743
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)