Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_I17
(794 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P15771|NUCL_CHICK Nucleolin (Protein C23) 39 0.016
sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kina... 33 1.2
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kina... 33 1.2
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 32 2.6
sp|P20397|NUCL_XENLA Nucleolin (Protein C23) 31 3.4
sp|O04005|REHY_ARATH Peroxiredoxin (Thioredoxin peroxidase)... 31 3.4
sp|O93532|K2CO_CHICK Keratin, type II cytoskeletal cochleal... 31 4.4
sp|P08729|K2C7_HUMAN Keratin, type II cytoskeletal 7 (Cytok... 31 4.4
sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) ... 30 7.6
>sp|P15771|NUCL_CHICK Nucleolin (Protein C23)
Length = 694
Score = 38.9 bits (89), Expect = 0.016
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +3
Query: 33 KATTIKMLPVKKTDKSMTLTAFAEYPSEEDAIFDYDNKHGVEIDGMLINVKFQS----KS 200
KAT+IKM P + AF E+P+ EDA ++ + EI+G I ++F S K
Sbjct: 483 KATSIKM-PQNNQGRPKGY-AFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG 540
Query: 201 NTNIKKGISWVKTALQVVGINKAMSNDDMKKLF 299
N N + G + L V G+++ + + +++ F
Sbjct: 541 NMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 573
>sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
(CLK-1) (CDK11) (p58 CLK-1)
Length = 795
Score = 32.7 bits (73), Expect = 1.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 592 RKETKKVKMRKRISNRNKSLMEKKRLEQRKSFLE*RRQISNHHIIIR 732
RK ++ KMR++ + + ++R E+R+ E RR++S HH +R
Sbjct: 173 RKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMR 219
>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 2)
(CDK11)
Length = 780
Score = 32.7 bits (73), Expect = 1.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 592 RKETKKVKMRKRISNRNKSLMEKKRLEQRKSFLE*RRQISNHHIIIR 732
RK ++ KMR++ + + ++R E+R+ E RR++S HH +R
Sbjct: 161 RKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMR 207
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 31.6 bits (70), Expect = 2.6
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 592 RKETKKVKMRKRISNRNKSLMEKKRLEQRKSFLE*RRQISNHHIIIR 732
RK ++ K+R++ + + ++R E+R+ E RR++S HH +R
Sbjct: 173 RKRERERKLREQQKEQREQKERERRAEERRKEREARREVSAHHRTMR 219
>sp|P20397|NUCL_XENLA Nucleolin (Protein C23)
Length = 651
Score = 31.2 bits (69), Expect = 3.4
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +3
Query: 18 RRTMVKATTIKMLPVKKTDKSMTLTAFAEYPSEEDAIFDYDNKHGVEIDGMLINVKF-QS 194
R KAT+I++ + K AF E+ S EDA D+ + EI+G I ++F Q
Sbjct: 432 REVFEKATSIRIPQNQGRAKGF---AFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQG 488
Query: 195 KSNTNIKKGISWVKTALQVVGINKAMSNDDMKKLF 299
+G S L V G+++ + + +K+ F
Sbjct: 489 GGPQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAF 523
>sp|O04005|REHY_ARATH Peroxiredoxin (Thioredoxin peroxidase) (Rehydrin homolog)
Length = 216
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 156 EIDGMLINVKFQSKSNTNIKKGISWVKTALQVVGINKAMSNDDMKKLFPQALK 314
E+ L ++ SK N I ++W Q V I+ A+S+++ KK+FPQ K
Sbjct: 149 EVLRALDSLLMASKHNNKIATPVNWKPD--QPVVISPAVSDEEAKKMFPQGFK 199
>sp|O93532|K2CO_CHICK Keratin, type II cytoskeletal cochleal (Cytokeratin otokeratin)
Length = 492
Score = 30.8 bits (68), Expect = 4.4
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 111 SEEDAIFDYDNKHGVEIDGMLINVKFQSK--SNTNIKKGISWVKTALQVVGINKAMSNDD 284
S+ + DN +++D ++ VK Q + +N + + SW ++ + + + DD
Sbjct: 263 SDTSVVLSMDNSRNLDLDSIIAEVKAQYEDIANRSRAEAESWYQSKFEALQVTAGKHGDD 322
Query: 285 MKKLFPQALKIN 320
++ + +IN
Sbjct: 323 LRNTKNEITEIN 334
>sp|P08729|K2C7_HUMAN Keratin, type II cytoskeletal 7 (Cytokeratin-7) (CK-7) (Keratin-7)
(K7) (Sarcolectin)
Length = 469
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +3
Query: 66 KTDKSMTLTAFAEYPSEEDAIFDYDNKHGVEIDGMLINVK--FQSKSNTNIKKGISWVKT 239
+T LT S+ + DN +++DG++ VK ++ + + + +W +T
Sbjct: 226 RTLNETELTELQSQISDTSVVLSMDNSRSLDLDGIIAEVKAQYEEMAKCSRAEAEAWYQT 285
Query: 240 ALQVVGINKAMSNDDMKKLFPQALKINWKVGDQVAHI-NYENE 365
+ + DD++ + ++N + A I N +N+
Sbjct: 286 KFETLQAQAGKHGDDLRNTRNEISEMNRAIQRLQAEIDNIKNQ 328
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma breakpoint
region 1 protein)
Length = 656
Score = 30.0 bits (66), Expect = 7.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Frame = +3
Query: 237 TALQVVGINKAMSNDDMKKLFPQ--ALKINWKVGDQVAHINYENE-----ADCSVDYSN 392
+A+ V G+N +++ DD+ F Q +K+N + G + HI + E D +V Y +
Sbjct: 361 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 419
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,871,764
Number of Sequences: 369166
Number of extensions: 1418014
Number of successful extensions: 4349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4348
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)