DrC_00559
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00559 (588 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|O95478|TIP1_HUMAN TGF beta-inducible nuclear protein 1 (... 210 2e-54 sp|Q9CR47|TIP1_MOUSE TGF beta-inducible nuclear protein 1 (... 210 2e-54 sp|Q9QYU7|TIP1_RAT TGF beta-inducible nuclear protein 1 (CD... 205 8e-53 sp|P40078|YEV6_YEAST Hypothetical 29.7 kDa protein in RSP5-... 188 8e-48 sp|P14870|T2F1_FLAOK Type IIS restriction enzyme FokI (Endo... 32 1.5 sp|P29345|RS6_TOBAC 40S ribosomal protein S6 32 1.5 sp|O48549|RS6A_ARATH 40S ribosomal protein S6-1 31 2.6 sp|P51430|RS6B_ARATH 40S ribosomal protein S6-2 31 2.6 sp|Q6BXH8|RS6_DEBHA 40S ribosomal protein S6 31 2.6 sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 31 2.6
>sp|O95478|TIP1_HUMAN TGF beta-inducible nuclear protein 1 (Hairy cell leukemia protein 1) (HUSSY-29) Length = 260 Score = 210 bits (534), Expect = 2e-54 Identities = 108/192 (56%), Positives = 137/192 (71%), Gaps = 3/192 (1%) Frame = +1 Query: 1 NEERKTKR--DVEHIAGDNPVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQV 174 +E+R TK+ D + G P ++L R+ Q A++LS IKQKR EKAGKWEVP+PKV+ Sbjct: 68 HEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQ 127 Query: 175 SEKEAFKVQRSGKTKRKAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354 E E KV R+GK K+KAWKR++TK+ FV GFTRK PKYERFI+PM LR K+A+VT + Sbjct: 128 GETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPE 187 Query: 355 L-GTFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTNI 531 L TF LPILGVKKNP+S EV+VSE+G+VT GGK+++G YAQVTN Sbjct: 188 LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNN 247 Query: 532 PENEGCCNAILL 567 PEN+GC NA+LL Sbjct: 248 PENDGCINAVLL 259
>sp|Q9CR47|TIP1_MOUSE TGF beta-inducible nuclear protein 1 (L-name related LNR42) Length = 260 Score = 210 bits (534), Expect = 2e-54 Identities = 108/192 (56%), Positives = 137/192 (71%), Gaps = 3/192 (1%) Frame = +1 Query: 1 NEERKTKR--DVEHIAGDNPVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQV 174 +E+R TK+ D + G P ++L R+ Q A++LS IKQKR EKAGKWEVP+PKV+ Sbjct: 68 HEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQ 127 Query: 175 SEKEAFKVQRSGKTKRKAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354 E E KV R+GK K+KAWKR++TK+ FV GFTRK PKYERFI+PM LR K+A+VT + Sbjct: 128 GETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPE 187 Query: 355 L-GTFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTNI 531 L TF LPILGVKKNP+S EV+VSE+G+VT GGK+++G YAQVTN Sbjct: 188 LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNN 247 Query: 532 PENEGCCNAILL 567 PEN+GC NA+LL Sbjct: 248 PENDGCINAVLL 259
>sp|Q9QYU7|TIP1_RAT TGF beta-inducible nuclear protein 1 (CDK105 protein) Length = 260 Score = 205 bits (521), Expect = 8e-53 Identities = 105/192 (54%), Positives = 136/192 (70%), Gaps = 3/192 (1%) Frame = +1 Query: 1 NEERKTKR--DVEHIAGDNPVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQV 174 +E+R TK+ D + G P ++L R+ Q A++LS IKQKR EKAGKWE P+PKV+ Sbjct: 68 HEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWESPLPKVRAQ 127 Query: 175 SEKEAFKVQRSGKTKRKAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354 E E KV R+GK K+KAW+R++TK+ FV GFTRK PKYE+FI+PM LR K+A+VT + Sbjct: 128 GETELLKVIRTGKRKKKAWRRMVTKVCFVGDGFTRKPPKYEKFIRPMGLRFKKAHVTHPE 187 Query: 355 L-GTFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTNI 531 L TF LPILGVKKNP+S EV+VSE+G+VT GGK+++G YAQVTN Sbjct: 188 LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNN 247 Query: 532 PENEGCCNAILL 567 PEN+GC NA+LL Sbjct: 248 PENDGCINAVLL 259
>sp|P40078|YEV6_YEAST Hypothetical 29.7 kDa protein in RSP5-LCP5 intergenic region Length = 261 Score = 188 bits (478), Expect = 8e-48 Identities = 99/193 (51%), Positives = 133/193 (68%), Gaps = 4/193 (2%) Frame = +1 Query: 1 NEERKTKRDVEHIAGDN---PVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQ 171 +E+ K K + + D P ++L R++ A+ +S++IKQKRLEKA K+ VP+PKV+ Sbjct: 68 HEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKRLEKADKFSVPLPKVRG 127 Query: 172 VSEKEAFKVQRSGKTKRKAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSK 351 +SE+E FKV ++GK++ K+WKR+ITK TFV GFTR+ K ER I+P ALR K+ANVT Sbjct: 128 ISEEEMFKVIKTGKSRSKSWKRMITKHTFVGEGFTRRPVKMERIIRPSALRQKKANVTHP 187 Query: 352 KLG-TFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTN 528 +LG T LPIL VKKNP S EV+VSE+GMVT GGK+V+G YAQVTN Sbjct: 188 ELGVTVFLPILAVKKNPQSPMYTQLGVLTKGTIIEVNVSELGMVTAGGKVVWGKYAQVTN 247 Query: 529 IPENEGCCNAILL 567 P+ +GC NA+LL Sbjct: 248 EPDRDGCVNAVLL 260
>sp|P14870|T2F1_FLAOK Type IIS restriction enzyme FokI (Endonuclease FokI) (R.FokI) Length = 583 Score = 31.6 bits (70), Expect = 1.5 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 19/110 (17%) Frame = +1 Query: 88 AELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKE----AFKVQRSGKT------------- 216 A ++ + + L K GK E IP + + KE AFK+ G Sbjct: 231 ARMIGGWLDKLGLVKQGKKEFIIPTLGKPDNKEFISHAFKITGEGLKVLRRAKGSTKFTR 290 Query: 217 --KRKAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKKLG 360 KR W+ + T +T + TR+A E IK +L++++ KKLG Sbjct: 291 VPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLG 340
>sp|P29345|RS6_TOBAC 40S ribosomal protein S6 Length = 199 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 232 KRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354 K V T F KAPK +R + P+ L+ KRA + KK Sbjct: 110 KYVNTTAEFTTKWKGSKAPKIQRLVTPLTLQRKRARIADKK 150
>sp|O48549|RS6A_ARATH 40S ribosomal protein S6-1 Length = 250 Score = 30.8 bits (68), Expect = 2.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 280 KAPKYERFIKPMALRLKRANVTSKK 354 KAPK +R + P+ L+ KRA + KK Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKK 200
>sp|P51430|RS6B_ARATH 40S ribosomal protein S6-2 Length = 249 Score = 30.8 bits (68), Expect = 2.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 280 KAPKYERFIKPMALRLKRANVTSKK 354 KAPK +R + P+ L+ KRA + KK Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKK 200
>sp|Q6BXH8|RS6_DEBHA 40S ribosomal protein S6 Length = 236 Score = 30.8 bits (68), Expect = 2.6 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = +1 Query: 79 QENAELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKEAFKVQRS-GKTKRKAWKRVITKMT 255 Q+ A L + +KQ + G + PK ++ K A +++ G TK ++ + + Sbjct: 104 QDLAVLALSVVKQGDSDIEGLTDTTTPK--RLGPKRANNIRKFFGLTKEDDVRQFVVRRE 161 Query: 256 FV--DPGFTRKAPKYERFIKPMALRLKRA 336 V D +T KAPK +R + P L+ KRA Sbjct: 162 VVKGDKKYT-KAPKIQRLVTPQTLQRKRA 189
>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 Length = 251 Score = 30.8 bits (68), Expect = 2.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 280 KAPKYERFIKPMALRLKRANVTSKK 354 KAPK +R + P+ L+ KRA + KK Sbjct: 176 KAPKIQRLVTPLTLQRKRARIAEKK 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,509,686
Number of Sequences: 369166
Number of extensions: 1070948
Number of successful extensions: 2610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2606
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
