Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_L06
(541 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95478|TIP1_HUMAN TGF beta-inducible nuclear protein 1 (... 206 3e-53
sp|Q9CR47|TIP1_MOUSE TGF beta-inducible nuclear protein 1 (... 206 3e-53
sp|Q9QYU7|TIP1_RAT TGF beta-inducible nuclear protein 1 (CD... 201 9e-52
sp|P40078|YEV6_YEAST Hypothetical 29.7 kDa protein in RSP5-... 187 1e-47
sp|P14870|T2F1_FLAOK Type IIS restriction enzyme FokI (Endo... 32 1.3
sp|P29345|RS6_TOBAC 40S ribosomal protein S6 32 1.3
sp|O48549|RS6A_ARATH 40S ribosomal protein S6-1 31 2.2
sp|P51430|RS6B_ARATH 40S ribosomal protein S6-2 31 2.2
sp|Q6BXH8|RS6_DEBHA 40S ribosomal protein S6 31 2.2
sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 31 2.2
>sp|O95478|TIP1_HUMAN TGF beta-inducible nuclear protein 1 (Hairy cell leukemia protein
1) (HUSSY-29)
Length = 260
Score = 206 bits (524), Expect = 3e-53
Identities = 102/173 (58%), Positives = 127/173 (73%), Gaps = 1/173 (0%)
Frame = +2
Query: 5 PVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKEAFKVQRSGKTKRKAW 184
P ++L R+ Q A++LS IKQKR EKAGKWEVP+PKV+ E E KV R+GK K+KAW
Sbjct: 87 PAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAW 146
Query: 185 KRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKKL-GTFNLPILGVKKNPNSX 361
KR++TK+ FV GFTRK PKYERFI+PM LR K+A+VT +L TF LPILGVKKNP+S
Sbjct: 147 KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSP 206
Query: 362 XXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTNIPENEGCCNAILL 520
EV+VSE+G+VT GGK+++G YAQVTN PEN+GC NA+LL
Sbjct: 207 LYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLL 259
>sp|Q9CR47|TIP1_MOUSE TGF beta-inducible nuclear protein 1 (L-name related LNR42)
Length = 260
Score = 206 bits (524), Expect = 3e-53
Identities = 102/173 (58%), Positives = 127/173 (73%), Gaps = 1/173 (0%)
Frame = +2
Query: 5 PVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKEAFKVQRSGKTKRKAW 184
P ++L R+ Q A++LS IKQKR EKAGKWEVP+PKV+ E E KV R+GK K+KAW
Sbjct: 87 PAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAW 146
Query: 185 KRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKKL-GTFNLPILGVKKNPNSX 361
KR++TK+ FV GFTRK PKYERFI+PM LR K+A+VT +L TF LPILGVKKNP+S
Sbjct: 147 KRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSP 206
Query: 362 XXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTNIPENEGCCNAILL 520
EV+VSE+G+VT GGK+++G YAQVTN PEN+GC NA+LL
Sbjct: 207 LYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLL 259
>sp|Q9QYU7|TIP1_RAT TGF beta-inducible nuclear protein 1 (CDK105 protein)
Length = 260
Score = 201 bits (511), Expect = 9e-52
Identities = 99/173 (57%), Positives = 126/173 (72%), Gaps = 1/173 (0%)
Frame = +2
Query: 5 PVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKEAFKVQRSGKTKRKAW 184
P ++L R+ Q A++LS IKQKR EKAGKWE P+PKV+ E E KV R+GK K+KAW
Sbjct: 87 PAYLLDREGQSRAKVLSNMIKQKRKEKAGKWESPLPKVRAQGETELLKVIRTGKRKKKAW 146
Query: 185 KRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKKL-GTFNLPILGVKKNPNSX 361
+R++TK+ FV GFTRK PKYE+FI+PM LR K+A+VT +L TF LPILGVKKNP+S
Sbjct: 147 RRMVTKVCFVGDGFTRKPPKYEKFIRPMGLRFKKAHVTHPELKATFCLPILGVKKNPSSP 206
Query: 362 XXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTNIPENEGCCNAILL 520
EV+VSE+G+VT GGK+++G YAQVTN PEN+GC NA+LL
Sbjct: 207 LYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLL 259
>sp|P40078|YEV6_YEAST Hypothetical 29.7 kDa protein in RSP5-LCP5 intergenic region
Length = 261
Score = 187 bits (476), Expect = 1e-47
Identities = 95/173 (54%), Positives = 125/173 (72%), Gaps = 1/173 (0%)
Frame = +2
Query: 5 PVFILQRKRQENAELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKEAFKVQRSGKTKRKAW 184
P ++L R++ A+ +S++IKQKRLEKA K+ VP+PKV+ +SE+E FKV ++GK++ K+W
Sbjct: 88 PTYLLDREQNNTAKAISSSIKQKRLEKADKFSVPLPKVRGISEEEMFKVIKTGKSRSKSW 147
Query: 185 KRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKKLG-TFNLPILGVKKNPNSX 361
KR+ITK TFV GFTR+ K ER I+P ALR K+ANVT +LG T LPIL VKKNP S
Sbjct: 148 KRMITKHTFVGEGFTRRPVKMERIIRPSALRQKKANVTHPELGVTVFLPILAVKKNPQSP 207
Query: 362 XXXXXXXXXXXXXXEVDVSEIGMVTPGGKIVYGSYAQVTNIPENEGCCNAILL 520
EV+VSE+GMVT GGK+V+G YAQVTN P+ +GC NA+LL
Sbjct: 208 MYTQLGVLTKGTIIEVNVSELGMVTAGGKVVWGKYAQVTNEPDRDGCVNAVLL 260
>sp|P14870|T2F1_FLAOK Type IIS restriction enzyme FokI (Endonuclease FokI) (R.FokI)
Length = 583
Score = 31.6 bits (70), Expect = 1.3
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Frame = +2
Query: 41 AELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKE----AFKVQRSGKT------------- 169
A ++ + + L K GK E IP + + KE AFK+ G
Sbjct: 231 ARMIGGWLDKLGLVKQGKKEFIIPTLGKPDNKEFISHAFKITGEGLKVLRRAKGSTKFTR 290
Query: 170 --KRKAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKKLG 313
KR W+ + T +T + TR+A E IK +L++++ KKLG
Sbjct: 291 VPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLG 340
>sp|P29345|RS6_TOBAC 40S ribosomal protein S6
Length = 199
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 185 KRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 307
K V T F KAPK +R + P+ L+ KRA + KK
Sbjct: 110 KYVNTTAEFTTKWKGSKAPKIQRLVTPLTLQRKRARIADKK 150
>sp|O48549|RS6A_ARATH 40S ribosomal protein S6-1
Length = 250
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 233 KAPKYERFIKPMALRLKRANVTSKK 307
KAPK +R + P+ L+ KRA + KK
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKK 200
>sp|P51430|RS6B_ARATH 40S ribosomal protein S6-2
Length = 249
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 233 KAPKYERFIKPMALRLKRANVTSKK 307
KAPK +R + P+ L+ KRA + KK
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKK 200
>sp|Q6BXH8|RS6_DEBHA 40S ribosomal protein S6
Length = 236
Score = 30.8 bits (68), Expect = 2.2
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +2
Query: 32 QENAELLSTTIKQKRLEKAGKWEVPIPKVKQVSEKEAFKVQRS-GKTKRKAWKRVITKMT 208
Q+ A L + +KQ + G + PK ++ K A +++ G TK ++ + +
Sbjct: 104 QDLAVLALSVVKQGDSDIEGLTDTTTPK--RLGPKRANNIRKFFGLTKEDDVRQFVVRRE 161
Query: 209 FV--DPGFTRKAPKYERFIKPMALRLKRA 289
V D +T KAPK +R + P L+ KRA
Sbjct: 162 VVKGDKKYT-KAPKIQRLVTPQTLQRKRA 189
>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6
Length = 251
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 233 KAPKYERFIKPMALRLKRANVTSKK 307
KAPK +R + P+ L+ KRA + KK
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIAEKK 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,725,965
Number of Sequences: 369166
Number of extensions: 1063903
Number of successful extensions: 2519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2515
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)