Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_I09
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95478|TIP1_HUMAN TGF beta-inducible nuclear protein 1 (... 150 1e-36
sp|Q9CR47|TIP1_MOUSE TGF beta-inducible nuclear protein 1 (... 150 1e-36
sp|Q9QYU7|TIP1_RAT TGF beta-inducible nuclear protein 1 (CD... 145 3e-35
sp|P40078|YEV6_YEAST Hypothetical 29.7 kDa protein in RSP5-... 131 9e-31
sp|P29345|RS6_TOBAC 40S ribosomal protein S6 32 0.93
sp|O48549|RS6A_ARATH 40S ribosomal protein S6-1 31 1.6
sp|P51430|RS6B_ARATH 40S ribosomal protein S6-2 31 1.6
sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 31 1.6
sp|P14870|T2F1_FLAOK Type IIS restriction enzyme FokI (Endo... 30 2.7
sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2... 30 3.5
>sp|O95478|TIP1_HUMAN TGF beta-inducible nuclear protein 1 (Hairy cell leukemia protein
1) (HUSSY-29)
Length = 260
Score = 150 bits (380), Expect = 1e-36
Identities = 83/158 (52%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +1
Query: 1 NEERKTKR--DVEHIAGDNPVFILQRKRQENAELLSTTIKQKRLEKAG*WEVPIPKVKQV 174
+E+R TK+ D + G P ++L R+ Q A++LS IKQKR EKAG WEVP+PKV+
Sbjct: 68 HEKRNTKQKNDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQ 127
Query: 175 SEKEAFKVQRSGKTKRIAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354
E E KV R+GK K+ AWKR++TK+ FV GFTRK PKYERFI+PM LR K+A+VT +
Sbjct: 128 GETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPE 187
Query: 355 L-GTFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVS 465
L TF LPILGVKKNP+S EV+VS
Sbjct: 188 LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVS 225
>sp|Q9CR47|TIP1_MOUSE TGF beta-inducible nuclear protein 1 (L-name related LNR42)
Length = 260
Score = 150 bits (380), Expect = 1e-36
Identities = 83/158 (52%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Frame = +1
Query: 1 NEERKTKR--DVEHIAGDNPVFILQRKRQENAELLSTTIKQKRLEKAG*WEVPIPKVKQV 174
+E+R TK+ D + G P ++L R+ Q A++LS IKQKR EKAG WEVP+PKV+
Sbjct: 68 HEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWEVPLPKVRAQ 127
Query: 175 SEKEAFKVQRSGKTKRIAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354
E E KV R+GK K+ AWKR++TK+ FV GFTRK PKYERFI+PM LR K+A+VT +
Sbjct: 128 GETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPE 187
Query: 355 L-GTFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVS 465
L TF LPILGVKKNP+S EV+VS
Sbjct: 188 LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVS 225
>sp|Q9QYU7|TIP1_RAT TGF beta-inducible nuclear protein 1 (CDK105 protein)
Length = 260
Score = 145 bits (367), Expect = 3e-35
Identities = 80/158 (50%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Frame = +1
Query: 1 NEERKTKR--DVEHIAGDNPVFILQRKRQENAELLSTTIKQKRLEKAG*WEVPIPKVKQV 174
+E+R TK+ D + G P ++L R+ Q A++LS IKQKR EKAG WE P+PKV+
Sbjct: 68 HEKRNTKQKDDEKTPQGAVPAYLLDREGQSRAKVLSNMIKQKRKEKAGKWESPLPKVRAQ 127
Query: 175 SEKEAFKVQRSGKTKRIAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354
E E KV R+GK K+ AW+R++TK+ FV GFTRK PKYE+FI+PM LR K+A+VT +
Sbjct: 128 GETELLKVIRTGKRKKKAWRRMVTKVCFVGDGFTRKPPKYEKFIRPMGLRFKKAHVTHPE 187
Query: 355 L-GTFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVS 465
L TF LPILGVKKNP+S EV+VS
Sbjct: 188 LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVS 225
>sp|P40078|YEV6_YEAST Hypothetical 29.7 kDa protein in RSP5-LCP5 intergenic region
Length = 261
Score = 131 bits (329), Expect = 9e-31
Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 4/159 (2%)
Frame = +1
Query: 1 NEERKTKRDVEHIAGDN---PVFILQRKRQENAELLSTTIKQKRLEKAG*WEVPIPKVKQ 171
+E+ K K + + D P ++L R++ A+ +S++IKQKRLEKA + VP+PKV+
Sbjct: 68 HEQSKVKGSSKPLDTDGDALPTYLLDREQNNTAKAISSSIKQKRLEKADKFSVPLPKVRG 127
Query: 172 VSEKEAFKVQRSGKTKRIAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSK 351
+SE+E FKV ++GK++ +WKR+ITK TFV GFTR+ K ER I+P ALR K+ANVT
Sbjct: 128 ISEEEMFKVIKTGKSRSKSWKRMITKHTFVGEGFTRRPVKMERIIRPSALRQKKANVTHP 187
Query: 352 KLG-TFNLPILGVKKNPNSXXXXXXXXXXXXXXXEVDVS 465
+LG T LPIL VKKNP S EV+VS
Sbjct: 188 ELGVTVFLPILAVKKNPQSPMYTQLGVLTKGTIIEVNVS 226
>sp|P29345|RS6_TOBAC 40S ribosomal protein S6
Length = 199
Score = 31.6 bits (70), Expect = 0.93
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 232 KRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKK 354
K V T F KAPK +R + P+ L+ KRA + KK
Sbjct: 110 KYVNTTAEFTTKWKGSKAPKIQRLVTPLTLQRKRARIADKK 150
>sp|O48549|RS6A_ARATH 40S ribosomal protein S6-1
Length = 250
Score = 30.8 bits (68), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 280 KAPKYERFIKPMALRLKRANVTSKK 354
KAPK +R + P+ L+ KRA + KK
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKK 200
>sp|P51430|RS6B_ARATH 40S ribosomal protein S6-2
Length = 249
Score = 30.8 bits (68), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 280 KAPKYERFIKPMALRLKRANVTSKK 354
KAPK +R + P+ L+ KRA + KK
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKK 200
>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6
Length = 251
Score = 30.8 bits (68), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 280 KAPKYERFIKPMALRLKRANVTSKK 354
KAPK +R + P+ L+ KRA + KK
Sbjct: 176 KAPKIQRLVTPLTLQRKRARIAEKK 200
>sp|P14870|T2F1_FLAOK Type IIS restriction enzyme FokI (Endonuclease FokI) (R.FokI)
Length = 583
Score = 30.0 bits (66), Expect = 2.7
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Frame = +1
Query: 88 AELLSTTIKQKRLEKAG*WEVPIPKVKQVSEKE----AFKVQRSGKT------------- 216
A ++ + + L K G E IP + + KE AFK+ G
Sbjct: 231 ARMIGGWLDKLGLVKQGKKEFIIPTLGKPDNKEFISHAFKITGEGLKVLRRAKGSTKFTR 290
Query: 217 --KRIAWKRVITKMTFVDPGFTRKAPKYERFIKPMALRLKRANVTSKKLG 360
KR+ W+ + T +T + TR+A E IK +L++++ KKLG
Sbjct: 291 VPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLG 340
>sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 567
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Frame = -1
Query: 374 GKLNVPNFLLVTLALFNLNAIG--LINLSYLGAFLVNPGSTNVILVITLFH--------- 228
G LN+ FLL+ L+L N N I L + Y+ + N S ++L+I + +
Sbjct: 345 GLLNIGYFLLIILSLINNNNINSILAYIIYITQYCFNHISIFILLIIAIIYNNNYNNFIT 404
Query: 227 --AMRFVLPLR*TLNASFSLTCLTLGIGT 147
+ ++ L N + + CL + IG+
Sbjct: 405 NKNLIYIYELNYIKNNRYLIFCLIIIIGS 433
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,290,599
Number of Sequences: 369166
Number of extensions: 779448
Number of successful extensions: 1840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)