Planaria EST Database

DrC_00557

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00557
         (709 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21574|YBX2A_XENLA  Y-box binding protein 2-A (Cytoplasmi...   117   3e-26
sp|P41824|YBOXH_APLCA  Y-box factor homolog (APY1)                117   4e-26
sp|P45441|YBX2B_XENLA  Y-box binding protein 2-B (Cytoplasmi...   114   3e-25
sp|P21573|YBOX1_XENLA  Nuclease sensitive element binding pr...   113   6e-25
sp|P62960|YBOX1_MOUSE  Nuclease sensitive element binding pr...   113   6e-25
sp|P67809|YBOX1_HUMAN  Nuclease sensitive element binding pr...   113   6e-25
sp|Q06066|YBOX1_CHICK  Nuclease sensitive element binding pr...   113   6e-25
sp|Q9Y2T7|YBOX2_HUMAN  Y-box binding protein 2 (Germ cell-sp...   112   1e-24
sp|Q00436|YB3_XENLA  B box binding protein (YB3 protein)          112   1e-24
sp|Q9JKB3|DBPA_MOUSE  DNA-binding protein A (Cold shock doma...   111   2e-24

>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
           (mRNP4)
          Length = 336

 Score =  117 bits (293), Expect = 3e-26
 Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
 Frame = +3

Query: 15  NNSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDE 191
           N + K+VL  +V G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E
Sbjct: 31  NQANKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGE 90

Query: 192 DVEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN-NDFQNRNHRDNANNS 338
            VEFDVV+G KG EA NVTGP G  V+GS+FAPN   F+ R +R  A+ +
Sbjct: 91  TVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRRFYRPRADTA 140

>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
          Length = 253

 Score =  117 bits (292), Expect = 4e-26
 Identities = 56/89 (62%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +3

Query: 24  EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 200
           EK+++  +V+G VKW+NVK GYGFI+RDD  EDVFVHQ+AI +  P K  +S+G+ E VE
Sbjct: 25  EKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVE 84

Query: 201 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA 287
           FDVV+G KGNEA NVTGP G  VQGSK+A
Sbjct: 85  FDVVEGEKGNEAANVTGPEGSNVQGSKYA 113

>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
           (mRNP3)
          Length = 324

 Score =  114 bits (284), Expect = 3e-25
 Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
 Frame = +3

Query: 15  NNSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDE 191
           N   K++L  +V G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E
Sbjct: 31  NQINKKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGE 90

Query: 192 DVEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPNND-FQNRNHRDNANNS 338
            VEFDVV+G KG EA NVTGP G  V+GS+FAPN+  F+ + +R  A+ +
Sbjct: 91  TVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNSTRFRRQFYRPRADTA 140

>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 303

 Score =  113 bits (282), Expect = 6e-25
 Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
 Frame = +3

Query: 24  EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 200
           +K+V+  KV G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E VE
Sbjct: 29  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 88

Query: 201 FDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN-NDFQNRNHRDNANNSYRQ 347
           FDVV+G KG EA NVTGP G  VQGSK+A + N ++    R     +Y+Q
Sbjct: 89  FDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ 138

>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 322

 Score =  113 bits (282), Expect = 6e-25
 Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 10/115 (8%)
 Frame = +3

Query: 24  EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 200
           +K+V+  KV G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E VE
Sbjct: 49  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 108

Query: 201 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA---------PNNDFQNRNHRDNANNS 338
           FDVV+G KG EA NVTGP G  VQGSK+A         P      RN++ N  NS
Sbjct: 109 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 163

>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 324

 Score =  113 bits (282), Expect = 6e-25
 Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 10/115 (8%)
 Frame = +3

Query: 24  EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 200
           +K+V+  KV G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E VE
Sbjct: 51  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 110

Query: 201 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA---------PNNDFQNRNHRDNANNS 338
           FDVV+G KG EA NVTGP G  VQGSK+A         P      RN++ N  NS
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 165

>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 321

 Score =  113 bits (282), Expect = 6e-25
 Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 10/115 (8%)
 Frame = +3

Query: 24  EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 200
           +K+V+  KV G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E VE
Sbjct: 48  DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 107

Query: 201 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA---------PNNDFQNRNHRDNANNS 338
           FDVV+G KG EA NVTGP G  VQGSK+A         P      RN++ N  NS
Sbjct: 108 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 162

>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
           (Contrin) (MSY2 homolog)
          Length = 364

 Score =  112 bits (280), Expect = 1e-24
 Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
 Frame = +3

Query: 15  NNSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDE 191
           + ++K VL  +V G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI R  P K  +S+G+ E
Sbjct: 83  SQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGE 142

Query: 192 DVEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN 293
            VEFDVV+G KG EA NVTGP G  V+GS++APN
Sbjct: 143 TVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPN 176

>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
          Length = 305

 Score =  112 bits (279), Expect = 1e-24
 Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
 Frame = +3

Query: 24  EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 200
           EK+V+  KV G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E VE
Sbjct: 29  EKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 88

Query: 201 FDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN-NDFQNRNHRDNANNSYRQ 347
           FDVV+G KG EA NVTGP    VQGSK+A + N+++    R     +Y+Q
Sbjct: 89  FDVVEGEKGAEAANVTGPGPVPVQGSKYAADRNNYRRYPRRRGPPRNYQQ 138

>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
           3)
 sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
          Length = 361

 Score =  111 bits (278), Expect = 2e-24
 Identities = 55/101 (54%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
 Frame = +3

Query: 18  NSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDED 194
           ++EK+VL  KV G VKW+NV+ GYGFI+R+D  EDVFVHQ+AI +  P K  +S+G+ E 
Sbjct: 73  DAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGET 132

Query: 195 VEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPNNDFQNRNH 317
           VEFDVV+G KG EA NVTGP+G  V+GS++A +     R +
Sbjct: 133 VEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGY 173

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,737,443
Number of Sequences: 369166
Number of extensions: 891015
Number of successful extensions: 3125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2897
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00557

  1. Dr_sW_014_G22
  2. Dr_sW_003_B08
  3. Dr_sW_011_I24