Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_I24
(623 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 91 2e-18
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 90 4e-18
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 90 5e-18
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 88 2e-17
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 88 2e-17
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 88 2e-17
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 88 2e-17
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 88 2e-17
sp|Q9Z2C8|YBOX2_MOUSE Y-box binding protein 2 (Germ cell-sp... 86 6e-17
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 86 1e-16
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 90.9 bits (224), Expect = 2e-18
Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KG EA NVTGP G
Sbjct: 55 YGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGV 114
Query: 178 AVQGSKFAPN-NDFQNRNHRDNANNS 252
V+GS+FAPN F+ R +R A+ +
Sbjct: 115 PVKGSRFAPNRRRFRRRFYRPRADTA 140
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 90.1 bits (222), Expect = 4e-18
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+RDD EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KGNEA NVTGP G
Sbjct: 46 YGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGS 105
Query: 178 AVQGSKFA 201
VQGSK+A
Sbjct: 106 NVQGSKYA 113
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 89.7 bits (221), Expect = 5e-18
Identities = 47/86 (54%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KG EA NVTGP G
Sbjct: 55 YGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGV 114
Query: 178 AVQGSKFAPNND-FQNRNHRDNANNS 252
V+GS+FAPN+ F+ + +R A+ +
Sbjct: 115 PVKGSRFAPNSTRFRRQFYRPRADTA 140
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 88.2 bits (217), Expect = 2e-17
Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI R P K +S+G+ E VEFDVV+G KG EA NVTGP G
Sbjct: 107 YGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGV 166
Query: 178 AVQGSKFAPN 207
V+GS++APN
Sbjct: 167 PVKGSRYAPN 176
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 87.8 bits (216), Expect = 2e-17
Identities = 47/89 (52%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KG EA NVTGP G
Sbjct: 50 YGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGV 109
Query: 178 AVQGSKFAPN-NDFQNRNHRDNANNSYRQ 261
VQGSK+A + N ++ R +Y+Q
Sbjct: 110 PVQGSKYAADRNHYRRYPRRRGPPRNYQQ 138
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 87.8 bits (216), Expect = 2e-17
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 10/94 (10%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KG EA NVTGP G
Sbjct: 70 YGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGV 129
Query: 178 AVQGSKFA---------PNNDFQNRNHRDNANNS 252
VQGSK+A P RN++ N NS
Sbjct: 130 PVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 163
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 87.8 bits (216), Expect = 2e-17
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 10/94 (10%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KG EA NVTGP G
Sbjct: 72 YGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGV 131
Query: 178 AVQGSKFA---------PNNDFQNRNHRDNANNS 252
VQGSK+A P RN++ N NS
Sbjct: 132 PVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 165
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 87.8 bits (216), Expect = 2e-17
Identities = 49/94 (52%), Positives = 60/94 (63%), Gaps = 10/94 (10%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KG EA NVTGP G
Sbjct: 69 YGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGV 128
Query: 178 AVQGSKFA---------PNNDFQNRNHRDNANNS 252
VQGSK+A P RN++ N NS
Sbjct: 129 PVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 162
>sp|Q9Z2C8|YBOX2_MOUSE Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(FRGY2 homolog)
Length = 360
Score = 86.3 bits (212), Expect = 6e-17
Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI R P K +S+G+ E VEFDVV+G KG A NVTGP G
Sbjct: 109 YGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGARAANVTGPGGV 168
Query: 178 AVQGSKFAPN 207
V+GS++APN
Sbjct: 169 PVKGSRYAPN 178
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 85.5 bits (210), Expect = 1e-16
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 YGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVEFDVVKGSKGNEAMNVTGPNGD 177
YGFI+R+D EDVFVHQ+AI + P K +S+G+ E VEFDVV+G KG EA NVTGP
Sbjct: 50 YGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGPV 109
Query: 178 AVQGSKFAPN-NDFQNRNHRDNANNSYRQ 261
VQGSK+A + N+++ R +Y+Q
Sbjct: 110 PVQGSKYAADRNNYRRYPRRRGPPRNYQQ 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,573,671
Number of Sequences: 369166
Number of extensions: 694889
Number of successful extensions: 2466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2247
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)