Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_G22
(628 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 117 2e-26
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 117 3e-26
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 114 3e-25
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 113 5e-25
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 113 5e-25
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 113 5e-25
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 113 5e-25
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 112 8e-25
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 112 1e-24
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 111 1e-24
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 117 bits (293), Expect = 2e-26
Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
Frame = -3
Query: 614 NNSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDE 438
N + K+VL +V G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E
Sbjct: 31 NQANKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGE 90
Query: 437 DVEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN-NDFQNRNHRDNANNS 291
VEFDVV+G KG EA NVTGP G V+GS+FAPN F+ R +R A+ +
Sbjct: 91 TVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRRFYRPRADTA 140
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 117 bits (292), Expect = 3e-26
Identities = 56/89 (62%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Frame = -3
Query: 605 EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 429
EK+++ +V+G VKW+NVK GYGFI+RDD EDVFVHQ+AI + P K +S+G+ E VE
Sbjct: 25 EKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVE 84
Query: 428 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA 342
FDVV+G KGNEA NVTGP G VQGSK+A
Sbjct: 85 FDVVEGEKGNEAANVTGPEGSNVQGSKYA 113
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 114 bits (284), Expect = 3e-25
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
Frame = -3
Query: 614 NNSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDE 438
N K++L +V G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E
Sbjct: 31 NQINKKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGE 90
Query: 437 DVEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPNND-FQNRNHRDNANNS 291
VEFDVV+G KG EA NVTGP G V+GS+FAPN+ F+ + +R A+ +
Sbjct: 91 TVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNSTRFRRQFYRPRADTA 140
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 113 bits (282), Expect = 5e-25
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
Frame = -3
Query: 605 EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 429
+K+V+ KV G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E VE
Sbjct: 29 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 88
Query: 428 FDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN-NDFQNRNHRDNANNSYRQ 282
FDVV+G KG EA NVTGP G VQGSK+A + N ++ R +Y+Q
Sbjct: 89 FDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQ 138
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 113 bits (282), Expect = 5e-25
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 10/115 (8%)
Frame = -3
Query: 605 EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 429
+K+V+ KV G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E VE
Sbjct: 49 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 108
Query: 428 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA---------PNNDFQNRNHRDNANNS 291
FDVV+G KG EA NVTGP G VQGSK+A P RN++ N NS
Sbjct: 109 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 163
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 113 bits (282), Expect = 5e-25
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 10/115 (8%)
Frame = -3
Query: 605 EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 429
+K+V+ KV G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E VE
Sbjct: 51 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 110
Query: 428 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA---------PNNDFQNRNHRDNANNS 291
FDVV+G KG EA NVTGP G VQGSK+A P RN++ N NS
Sbjct: 111 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 165
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 113 bits (282), Expect = 5e-25
Identities = 60/115 (52%), Positives = 76/115 (66%), Gaps = 10/115 (8%)
Frame = -3
Query: 605 EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 429
+K+V+ KV G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E VE
Sbjct: 48 DKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 107
Query: 428 FDVVKGSKGNEAMNVTGPNGDAVQGSKFA---------PNNDFQNRNHRDNANNS 291
FDVV+G KG EA NVTGP G VQGSK+A P RN++ N NS
Sbjct: 108 FDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNS 162
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 112 bits (280), Expect = 8e-25
Identities = 55/94 (58%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
Frame = -3
Query: 614 NNSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGK-QKSLGEDE 438
+ ++K VL +V G VKW+NV+ GYGFI+R+D EDVFVHQ+AI R P K +S+G+ E
Sbjct: 83 SQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGE 142
Query: 437 DVEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN 336
VEFDVV+G KG EA NVTGP G V+GS++APN
Sbjct: 143 TVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPN 176
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 112 bits (279), Expect = 1e-24
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
Frame = -3
Query: 605 EKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDEDVE 429
EK+V+ KV G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E VE
Sbjct: 29 EKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVE 88
Query: 428 FDVVKGSKGNEAMNVTGPNGDAVQGSKFAPN-NDFQNRNHRDNANNSYRQ 282
FDVV+G KG EA NVTGP VQGSK+A + N+++ R +Y+Q
Sbjct: 89 FDVVEGEKGAEAANVTGPGPVPVQGSKYAADRNNYRRYPRRRGPPRNYQQ 138
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 111 bits (278), Expect = 1e-24
Identities = 55/101 (54%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = -3
Query: 611 NSEKEVLVHKVTGKVKWYNVKKGYGFIHRDDIDEDVFVHQSAISRCQPGKQ-KSLGEDED 435
++EK+VL KV G VKW+NV+ GYGFI+R+D EDVFVHQ+AI + P K +S+G+ E
Sbjct: 73 DAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGET 132
Query: 434 VEFDVVKGSKGNEAMNVTGPNGDAVQGSKFAPNNDFQNRNH 312
VEFDVV+G KG EA NVTGP+G V+GS++A + R +
Sbjct: 133 VEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGY 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,487,901
Number of Sequences: 369166
Number of extensions: 795063
Number of successful extensions: 2966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2738
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)