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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00555
         (498 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26258|TETN_CARSP  Tetranectin-like protein                     40   0.002
sp|Q9BYZ8|REG4_HUMAN  Regenerating islet-derived protein 4 p...    40   0.004
sp|P05452|TETN_HUMAN  Tetranectin precursor (TN) (Plasminoge...    40   0.004
sp|Q61830|MANR1_MOUSE  Macrophage mannose receptor 1 precurs...    39   0.009
sp|P50404|PSPD_MOUSE  Pulmonary surfactant-associated protei...    38   0.015
sp|P35248|SFTPD_RAT  Pulmonary surfactant-associated protein...    38   0.015
sp|P35247|SFTPD_HUMAN  Pulmonary surfactant-associated prote...    37   0.020
sp|Q96GW7|PGCB_HUMAN  Brevican core protein precursor (Brain...    37   0.034
sp|Q28062|PGCB_BOVIN  Brevican core protein precursor              37   0.034
sp|P35246|SFTPD_BOVIN  Pulmonary surfactant-associated prote...    37   0.034

>sp|P26258|TETN_CARSP Tetranectin-like protein
          Length = 166

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
 Frame = +2

Query: 161 SANLICKAYNMSLVVIMSDDINELVFSYVSSRI--KTPFWLDASETYVRRQWLYAAGHKI 334
           +AN  C A   +L +  S D    + SY    +     FW+  ++     +++   G  I
Sbjct: 59  AANEDCIAQGGTLSIPRSSDEGNSLRSYAKKSLVGARDFWIGVNDMTTEGKFVDVNGLPI 118

Query: 335 IYSKWEPDSELQGSNENCAVGTVGTGSSWSFRNCNTDNR 451
            Y  W+    + G+ ENC   +      WS   C ++ R
Sbjct: 119 TYFNWDRSKPVGGTRENCVAASTSGQGKWSDDVCRSEKR 157

>sp|Q9BYZ8|REG4_HUMAN Regenerating islet-derived protein 4 precursor (Reg IV) (REG-like
           protein) (Gastrointestinal secretory protein)
          Length = 158

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +2

Query: 164 ANLICKAYNMS--LVVIMSDDINELVFSYVSSRIKT-PFWLDASETYVRRQWLYAAGHKI 334
           A L C++Y     L  I+S      +  Y+S   ++ P W+   +   R+QW +  G   
Sbjct: 54  AELECQSYGNGAHLASILSLKEASTIAEYISGYQRSQPIWIGLHDPQKRQQWQWIDGAMY 113

Query: 335 IYSKWEPDSELQGSNENCA-VGTVGTGSSWSFRNCN 439
           +Y  W   S   G N++CA + +     +WS   CN
Sbjct: 114 LYRSWSGKS--MGGNKHCAEMSSNNNFLTWSSNECN 147

>sp|P05452|TETN_HUMAN Tetranectin precursor (TN) (Plasminogen-kringle 4 binding protein)
          Length = 202

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
 Frame = +2

Query: 155 FLSANLICKAYNMSLVVIMSDDINELVFSYVSSRI--KTPFWLDASETYVRRQWLYAAGH 328
           F  A+  C +   +L    +   N+ ++ Y+   +  +   WL  ++      W+   G 
Sbjct: 91  FHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVDMTGA 150

Query: 329 KIIYSKWEPDSELQ---GSNENCAVGTVGTGSSWSFRNC 436
           +I Y  WE +   Q   G  ENCAV +      W  + C
Sbjct: 151 RIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRC 189

>sp|Q61830|MANR1_MOUSE Macrophage mannose receptor 1 precursor (MMR)
          Length = 1456

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +2

Query: 164 ANLICKAYNMSLVVIMSDDINELVF-SYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIY 340
           A   CK  N  L+ +   +I+E ++ + ++S + +  W+  +   VR  W +A G    Y
Sbjct: 243 ARASCKQQNADLLSVT--EIHEQMYLTGLTSSLSSGLWIGLNSLSVRSGWQWAGGSPFRY 300

Query: 341 SKWEPDSELQGSNENCAVGTVGTGSSWSFRNC 436
             W P S      ++C     G  + W    C
Sbjct: 301 LNWLPGSPSSEPGKSCVSLNPGKNAKWENLEC 332

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +2

Query: 176 CKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIYSKWEP 355
           C+     L  I S +  + +FS +        W+  ++  ++  + ++ G  + ++KW P
Sbjct: 391 CRKEGGDLASIHSIEEFDFIFSQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLP 450

Query: 356 DSELQGSN--ENCAVGTVGTGSSWSFRNC 436
                 +N  E+C V   G    W+ R C
Sbjct: 451 GEPSHENNRQEDCVV-MKGKDGYWADRAC 478

>sp|P50404|PSPD_MOUSE Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
          Length = 374

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = +2

Query: 152 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 331
           PF  A  +CK     L    S   N  +   +++  K  F L  ++     ++ Y  G  
Sbjct: 272 PFEDAQEMCKQAGGQLASPRSATENAAIQQLITAHNKAAF-LSMTDVGTEGKFTYPTGEP 330

Query: 332 IIYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
           ++YS W P +    G  ENC    + T   W+ + C     V   F
Sbjct: 331 LVYSNWAPGEPNNNGGAENCV--EIFTNGQWNDKACGEQRLVICEF 374

>sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
           (CP4)
          Length = 374

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
 Frame = +2

Query: 152 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 331
           PF  A  +C+     L    S   N  V   V++  K  F L  ++     ++ Y  G  
Sbjct: 272 PFEDAKEMCRQAGGQLASPRSATENAAVQQLVTAHSKAAF-LSMTDVGTEGKFTYPTGEA 330

Query: 332 IIYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
           ++YS W P +    G  ENC    + T   W+ + C     V   F
Sbjct: 331 LVYSNWAPGEPNNNGGAENCV--EIFTNGQWNDKACGEQRLVICEF 374

>sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
          Length = 375

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
 Frame = +2

Query: 152 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 331
           PF  A L+C      L    S   N  +   V ++ +  F L  +++    ++ Y  G  
Sbjct: 273 PFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAF-LSMTDSKTEGKFTYPTGES 331

Query: 332 IIYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
           ++YS W P +    G +E+C    + T   W+ R C     V   F
Sbjct: 332 LVYSNWAPGEPNDDGGSEDCV--EIFTNGKWNDRACGEKRLVVCEF 375

>sp|Q96GW7|PGCB_HUMAN Brevican core protein precursor (Brain-enriched hyaluronan binding
           protein) (BEHAB protein)
          Length = 911

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 176 CKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIYSKW-- 349
           C+ Y   L  I + +  +    ++++R +   W+  ++  +   +L++ G  ++Y  W  
Sbjct: 716 CRMYGAHLASISTPEEQD----FINNRYREYQWIGLNDRTIEGDFLWSDGVPLLYENWNP 771

Query: 350 -EPDSELQGSNENCAVGTVGTGSSWSFRNCN 439
            +PDS    S ENC V        WS   CN
Sbjct: 772 GQPDSYFL-SGENCVVMVWHDQGQWSDVPCN 801

>sp|Q28062|PGCB_BOVIN Brevican core protein precursor
          Length = 912

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +2

Query: 176 CKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIYSKW-- 349
           C+ Y   L  I + +  +    ++++R +   W+  ++  +   +L++ G  ++Y  W  
Sbjct: 717 CRMYGAHLASISTPEEQD----FINNRYREYQWIGLNDRTIEGDFLWSDGVPLLYENWNP 772

Query: 350 -EPDSELQGSNENCAVGTVGTGSSWSFRNCN 439
            +PDS    S ENC V        WS   CN
Sbjct: 773 GQPDSYFL-SGENCVVMVWHDQGQWSDVPCN 802

>sp|P35246|SFTPD_BOVIN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
          Length = 369

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = +2

Query: 155 FLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKI 334
           F  A  IC      L    S   NE +    +++ K  F L  S+T     ++Y  G  +
Sbjct: 268 FQDAQQICTQAGGQLPSPRSGAENEALTQLATAQNKAAF-LSMSDTRKEGTFIYPTGEPL 326

Query: 335 IYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
           +YS W P +    G +ENC    +     W+ + C     V   F
Sbjct: 327 VYSNWAPQEPNNDGGSENCV--EIFPNGKWNDKVCGEQRLVICEF 369

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,486,744
Number of Sequences: 369166
Number of extensions: 1155391
Number of successful extensions: 2774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2774
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_014_G12
2. Dr_sW_022_L17