Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_G12
(498 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26258|TETN_CARSP Tetranectin-like protein 40 0.002
sp|Q9BYZ8|REG4_HUMAN Regenerating islet-derived protein 4 p... 40 0.004
sp|P05452|TETN_HUMAN Tetranectin precursor (TN) (Plasminoge... 40 0.004
sp|Q61830|MANR1_MOUSE Macrophage mannose receptor 1 precurs... 39 0.009
sp|P50404|PSPD_MOUSE Pulmonary surfactant-associated protei... 38 0.015
sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein... 38 0.015
sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated prote... 37 0.020
sp|Q96GW7|PGCB_HUMAN Brevican core protein precursor (Brain... 37 0.034
sp|Q28062|PGCB_BOVIN Brevican core protein precursor 37 0.034
sp|P35246|SFTPD_BOVIN Pulmonary surfactant-associated prote... 37 0.034
>sp|P26258|TETN_CARSP Tetranectin-like protein
Length = 166
Score = 40.4 bits (93), Expect = 0.002
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Frame = +2
Query: 161 SANLICKAYNMSLVVIMSDDINELVFSYVSSRI--KTPFWLDASETYVRRQWLYAAGHKI 334
+AN C A +L + S D + SY + FW+ ++ +++ G I
Sbjct: 59 AANEDCIAQGGTLSIPRSSDEGNSLRSYAKKSLVGARDFWIGVNDMTTEGKFVDVNGLPI 118
Query: 335 IYSKWEPDSELQGSNENCAVGTVGTGSSWSFRNCNTDNR 451
Y W+ + G+ ENC + WS C ++ R
Sbjct: 119 TYFNWDRSKPVGGTRENCVAASTSGQGKWSDDVCRSEKR 157
>sp|Q9BYZ8|REG4_HUMAN Regenerating islet-derived protein 4 precursor (Reg IV) (REG-like
protein) (Gastrointestinal secretory protein)
Length = 158
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = +2
Query: 164 ANLICKAYNMS--LVVIMSDDINELVFSYVSSRIKT-PFWLDASETYVRRQWLYAAGHKI 334
A L C++Y L I+S + Y+S ++ P W+ + R+QW + G
Sbjct: 54 AELECQSYGNGAHLASILSLKEASTIAEYISGYQRSQPIWIGLHDPQKRQQWQWIDGAMY 113
Query: 335 IYSKWEPDSELQGSNENCA-VGTVGTGSSWSFRNCN 439
+Y W S G N++CA + + +WS CN
Sbjct: 114 LYRSWSGKS--MGGNKHCAEMSSNNNFLTWSSNECN 147
>sp|P05452|TETN_HUMAN Tetranectin precursor (TN) (Plasminogen-kringle 4 binding protein)
Length = 202
Score = 39.7 bits (91), Expect = 0.004
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +2
Query: 155 FLSANLICKAYNMSLVVIMSDDINELVFSYVSSRI--KTPFWLDASETYVRRQWLYAAGH 328
F A+ C + +L + N+ ++ Y+ + + WL ++ W+ G
Sbjct: 91 FHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVDMTGA 150
Query: 329 KIIYSKWEPDSELQ---GSNENCAVGTVGTGSSWSFRNC 436
+I Y WE + Q G ENCAV + W + C
Sbjct: 151 RIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRC 189
>sp|Q61830|MANR1_MOUSE Macrophage mannose receptor 1 precursor (MMR)
Length = 1456
Score = 38.5 bits (88), Expect = 0.009
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +2
Query: 164 ANLICKAYNMSLVVIMSDDINELVF-SYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIY 340
A CK N L+ + +I+E ++ + ++S + + W+ + VR W +A G Y
Sbjct: 243 ARASCKQQNADLLSVT--EIHEQMYLTGLTSSLSSGLWIGLNSLSVRSGWQWAGGSPFRY 300
Query: 341 SKWEPDSELQGSNENCAVGTVGTGSSWSFRNC 436
W P S ++C G + W C
Sbjct: 301 LNWLPGSPSSEPGKSCVSLNPGKNAKWENLEC 332
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +2
Query: 176 CKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIYSKWEP 355
C+ L I S + + +FS + W+ ++ ++ + ++ G + ++KW P
Sbjct: 391 CRKEGGDLASIHSIEEFDFIFSQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLP 450
Query: 356 DSELQGSN--ENCAVGTVGTGSSWSFRNC 436
+N E+C V G W+ R C
Sbjct: 451 GEPSHENNRQEDCVV-MKGKDGYWADRAC 478
>sp|P50404|PSPD_MOUSE Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
Length = 374
Score = 37.7 bits (86), Expect = 0.015
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
Frame = +2
Query: 152 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 331
PF A +CK L S N + +++ K F L ++ ++ Y G
Sbjct: 272 PFEDAQEMCKQAGGQLASPRSATENAAIQQLITAHNKAAF-LSMTDVGTEGKFTYPTGEP 330
Query: 332 IIYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
++YS W P + G ENC + T W+ + C V F
Sbjct: 331 LVYSNWAPGEPNNNGGAENCV--EIFTNGQWNDKACGEQRLVICEF 374
>sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
(CP4)
Length = 374
Score = 37.7 bits (86), Expect = 0.015
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 1/106 (0%)
Frame = +2
Query: 152 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 331
PF A +C+ L S N V V++ K F L ++ ++ Y G
Sbjct: 272 PFEDAKEMCRQAGGQLASPRSATENAAVQQLVTAHSKAAF-LSMTDVGTEGKFTYPTGEA 330
Query: 332 IIYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
++YS W P + G ENC + T W+ + C V F
Sbjct: 331 LVYSNWAPGEPNNNGGAENCV--EIFTNGQWNDKACGEQRLVICEF 374
>sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
Length = 375
Score = 37.4 bits (85), Expect = 0.020
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Frame = +2
Query: 152 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 331
PF A L+C L S N + V ++ + F L +++ ++ Y G
Sbjct: 273 PFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAF-LSMTDSKTEGKFTYPTGES 331
Query: 332 IIYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
++YS W P + G +E+C + T W+ R C V F
Sbjct: 332 LVYSNWAPGEPNDDGGSEDCV--EIFTNGKWNDRACGEKRLVVCEF 375
>sp|Q96GW7|PGCB_HUMAN Brevican core protein precursor (Brain-enriched hyaluronan binding
protein) (BEHAB protein)
Length = 911
Score = 36.6 bits (83), Expect = 0.034
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 176 CKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIYSKW-- 349
C+ Y L I + + + ++++R + W+ ++ + +L++ G ++Y W
Sbjct: 716 CRMYGAHLASISTPEEQD----FINNRYREYQWIGLNDRTIEGDFLWSDGVPLLYENWNP 771
Query: 350 -EPDSELQGSNENCAVGTVGTGSSWSFRNCN 439
+PDS S ENC V WS CN
Sbjct: 772 GQPDSYFL-SGENCVVMVWHDQGQWSDVPCN 801
>sp|Q28062|PGCB_BOVIN Brevican core protein precursor
Length = 912
Score = 36.6 bits (83), Expect = 0.034
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 176 CKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKIIYSKW-- 349
C+ Y L I + + + ++++R + W+ ++ + +L++ G ++Y W
Sbjct: 717 CRMYGAHLASISTPEEQD----FINNRYREYQWIGLNDRTIEGDFLWSDGVPLLYENWNP 772
Query: 350 -EPDSELQGSNENCAVGTVGTGSSWSFRNCN 439
+PDS S ENC V WS CN
Sbjct: 773 GQPDSYFL-SGENCVVMVWHDQGQWSDVPCN 802
>sp|P35246|SFTPD_BOVIN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
Length = 369
Score = 36.6 bits (83), Expect = 0.034
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Frame = +2
Query: 155 FLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKI 334
F A IC L S NE + +++ K F L S+T ++Y G +
Sbjct: 268 FQDAQQICTQAGGQLPSPRSGAENEALTQLATAQNKAAF-LSMSDTRKEGTFIYPTGEPL 326
Query: 335 IYSKWEP-DSELQGSNENCAVGTVGTGSSWSFRNCNTDNRVCMLF 466
+YS W P + G +ENC + W+ + C V F
Sbjct: 327 VYSNWAPQEPNNDGGSENCV--EIFPNGKWNDKVCGEQRLVICEF 369
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,486,744
Number of Sequences: 369166
Number of extensions: 1155391
Number of successful extensions: 2774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2774
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)