Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_L17
(351 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26258|TETN_CARSP Tetranectin-like protein 44 1e-04
sp|Q9BYZ8|REG4_HUMAN Regenerating islet-derived protein 4 p... 41 0.001
sp|P50404|PSPD_MOUSE Pulmonary surfactant-associated protei... 41 0.001
sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein... 41 0.001
sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated prote... 41 0.001
sp|P05452|TETN_HUMAN Tetranectin precursor (TN) (Plasminoge... 40 0.001
sp|P82596|PLC_HALLA Perlucin 40 0.002
sp|P35246|SFTPD_BOVIN Pulmonary surfactant-associated prote... 40 0.002
sp|Q28008|CLC3A_BOVIN C-type lectin domain family 3 member ... 39 0.003
sp|Q9EPW4|CLC3A_MOUSE C-type lectin domain family 3 member ... 38 0.006
>sp|P26258|TETN_CARSP Tetranectin-like protein
Length = 166
Score = 43.5 bits (101), Expect = 1e-04
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 15 SANLICKAYNMSLVVIMSDDINELVFSYVSSRI--KTPFWLDASETYVRRQWLYAAGHKI 188
+AN C A +L + S D + SY + FW+ ++ +++ G I
Sbjct: 59 AANEDCIAQGGTLSIPRSSDEGNSLRSYAKKSLVGARDFWIGVNDMTTEGKFVDVNGLPI 118
Query: 189 IYSKWEPDSELQGSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
Y W+ + G+ ENC + WS C ++ R +C
Sbjct: 119 TYFNWDRSKPVGGTRENCVAASTSGQGKWSDDVCRSEKRYIC 160
>sp|Q9BYZ8|REG4_HUMAN Regenerating islet-derived protein 4 precursor (Reg IV) (REG-like
protein) (Gastrointestinal secretory protein)
Length = 158
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = +3
Query: 18 ANLICKAYNMS--LVVIMSDDINELVFSYVSSRIKT-PFWLDASETYVRRQWLYAAGHKI 188
A L C++Y L I+S + Y+S ++ P W+ + R+QW + G
Sbjct: 54 AELECQSYGNGAHLASILSLKEASTIAEYISGYQRSQPIWIGLHDPQKRQQWQWIDGAMY 113
Query: 189 IYSKWEPDSELQGSNENCA-VGTVGTGSFWSFRNCNTDNRVVC 314
+Y W S G N++CA + + WS CN +C
Sbjct: 114 LYRSWSGKS--MGGNKHCAEMSSNNNFLTWSSNECNKRQHFLC 154
>sp|P50404|PSPD_MOUSE Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
Length = 374
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Frame = +3
Query: 6 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 185
PF A +CK L S N + +++ K F L ++ ++ Y G
Sbjct: 272 PFEDAQEMCKQAGGQLASPRSATENAAIQQLITAHNKAAF-LSMTDVGTEGKFTYPTGEP 330
Query: 186 IIYSKWEP-DSELQGSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
++YS W P + G ENC + T W+ + C V+C
Sbjct: 331 LVYSNWAPGEPNNNGGAENCV--EIFTNGQWNDKACGEQRLVIC 372
>sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
(CP4)
Length = 374
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Frame = +3
Query: 6 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 185
PF A +C+ L S N V V++ K F L ++ ++ Y G
Sbjct: 272 PFEDAKEMCRQAGGQLASPRSATENAAVQQLVTAHSKAAF-LSMTDVGTEGKFTYPTGEA 330
Query: 186 IIYSKWEP-DSELQGSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
++YS W P + G ENC + T W+ + C V+C
Sbjct: 331 LVYSNWAPGEPNNNGGAENCV--EIFTNGQWNDKACGEQRLVIC 372
>sp|P35247|SFTPD_HUMAN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
Length = 375
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +3
Query: 6 PFLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHK 185
PF A L+C L S N + V ++ + F L +++ ++ Y G
Sbjct: 273 PFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAF-LSMTDSKTEGKFTYPTGES 331
Query: 186 IIYSKWEP-DSELQGSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
++YS W P + G +E+C + T W+ R C VVC
Sbjct: 332 LVYSNWAPGEPNDDGGSEDCV--EIFTNGKWNDRACGEKRLVVC 373
>sp|P05452|TETN_HUMAN Tetranectin precursor (TN) (Plasminogen-kringle 4 binding protein)
Length = 202
Score = 40.4 bits (93), Expect = 0.001
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Frame = +3
Query: 9 FLSANLICKAYNMSLVVIMSDDINELVFSYVSSRI--KTPFWLDASETYVRRQWLYAAGH 182
F A+ C + +L + N+ ++ Y+ + + WL ++ W+ G
Sbjct: 91 FHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVDMTGA 150
Query: 183 KIIYSKWEPDSELQ---GSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
+I Y WE + Q G ENCAV + W + C +C
Sbjct: 151 RIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLPYIC 197
>sp|P82596|PLC_HALLA Perlucin
Length = 155
Score = 40.0 bits (92), Expect = 0.002
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = +3
Query: 9 FLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPF--WLDASETYVRRQWLYAAGH 182
F A C+ L +I + D + + Y ++R+ F WL AS+ + +WL+
Sbjct: 23 FAEAAGYCRYLESHLAIISNKDEDSFIRGY-ATRLGEAFNYWLGASDLNIEGRWLWEGQR 81
Query: 183 KIIYSKWEP-DSELQGSNENCAVGTVGTGSF-WSFRNCNTDNRVVC 314
++ Y+ W P + G E+C G++ W+ C + +C
Sbjct: 82 RMNYTNWSPGQPDNAGGIEHCLELRRDLGNYLWNDYQCQKPSHFIC 127
>sp|P35246|SFTPD_BOVIN Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
Length = 369
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = +3
Query: 9 FLSANLICKAYNMSLVVIMSDDINELVFSYVSSRIKTPFWLDASETYVRRQWLYAAGHKI 188
F A IC L S NE + +++ K F L S+T ++Y G +
Sbjct: 268 FQDAQQICTQAGGQLPSPRSGAENEALTQLATAQNKAAF-LSMSDTRKEGTFIYPTGEPL 326
Query: 189 IYSKWEP-DSELQGSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
+YS W P + G +ENC + W+ + C V+C
Sbjct: 327 VYSNWAPQEPNNDGGSENCV--EIFPNGKWNDKVCGEQRLVIC 367
>sp|Q28008|CLC3A_BOVIN C-type lectin domain family 3 member A precursor (C-type lectin
superfamily member 1) (Cartilage-derived C-type lectin)
Length = 197
Score = 39.3 bits (90), Expect = 0.003
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 9 FLSANLICKAYNMSLVVIMS-DDINELV-FSYVSSRIKTPFWLDASETYVRRQWLYAAGH 182
F AN C + +LVV S D+IN L + S FWL ++ +++ G
Sbjct: 88 FHEANEDCISKGGTLVVPRSADEINALRDYGKRSLPGVNDFWLGINDMVAEGKFVDINGL 147
Query: 183 KIIYSKWEPDSELQGSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
I + W+ G ENCA+ + WS C++ R +C
Sbjct: 148 AISFLNWDQAQPNGGKRENCALFSQSAQGKWSDEACHSSKRYIC 191
>sp|Q9EPW4|CLC3A_MOUSE C-type lectin domain family 3 member A precursor (C-type lectin
superfamily member 1) (Cartilage-derived C-type lectin)
Length = 196
Score = 38.1 bits (87), Expect = 0.006
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +3
Query: 18 ANLICKAYNMSLVVIM-SDDINELV-FSYVSSRIKTPFWLDASETYVRRQWLYAAGHKII 191
AN C + +LVV SD+IN L + S FWL ++ ++L G +
Sbjct: 91 ANEDCISKGGTLVVPRNSDEINALRDYGKRSLPGVNDFWLGINDMVTEGKFLDVHGFAVS 150
Query: 192 YSKWEPDSELQGSNENCAVGTVGTGSFWSFRNCNTDNRVVC 314
+ W+ G ENC + + WS C + R +C
Sbjct: 151 FLNWDRAQPSGGKRENCVLFSQSAQGKWSDEACRSSKRYIC 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,942,503
Number of Sequences: 369166
Number of extensions: 734704
Number of successful extensions: 1933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1933
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)