Planaria EST Database

DrC_00546

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00546
         (689 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NQC7|CYLD_HUMAN  Probable ubiquitin carboxyl-terminal h...    69   9e-12
sp|Q80TQ2|CYLD_MOUSE  Probable ubiquitin carboxyl-terminal h...    67   3e-11
sp|P55241|GLGL1_MAIZE  Glucose-1-phosphate adenylyltransfera...    32   1.6  
sp|Q9V8W3|RABEP_DROME  Rab proteins geranylgeranyltransferas...    30   4.6  

>sp|Q9NQC7|CYLD_HUMAN Probable ubiquitin carboxyl-terminal hydrolase CYLD (Ubiquitin
           thiolesterase CYLD) (Ubiquitin specific-processing
           protease CYLD) (Deubiquitinating enzyme CYLD)
          Length = 956

 Score = 69.3 bits (168), Expect = 9e-12
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
 Frame = +2

Query: 44  EIVNILRSKIIFPLRKYEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELLETLFHSIT 223
           E   +LR++I+ PLR Y YV    + + R+IL  +     F   EKDPEE L  LFH I 
Sbjct: 635 ETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHIL 694

Query: 224 PNDPFLRTYDIKSA--NFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDE 385
             +P L+   I+SA    Q+C+  Q+F        VPTI+++L  +F+   +   E
Sbjct: 695 RVEPLLK---IRSAGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAE 747

>sp|Q80TQ2|CYLD_MOUSE Probable ubiquitin carboxyl-terminal hydrolase CYLD (Ubiquitin
           thiolesterase CYLD) (Ubiquitin specific-processing
           protease CYLD) (Deubiquitinating enzyme CYLD)
          Length = 952

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
 Frame = +2

Query: 44  EIVNILRSKIIFPLRKYEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELLETLFHSIT 223
           E   +LR++I+ PLR Y YV    + + R+IL  +     F   EKDPEE L  LFH I 
Sbjct: 631 ETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHDIL 690

Query: 224 PNDPFLRTYDIKSA--NFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDE 385
             +P L+   I+SA    Q+C   Q+F        VPTI+++L  +F+   +   E
Sbjct: 691 RVEPLLK---IRSAGQKVQDCNFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAE 743

>sp|P55241|GLGL1_MAIZE Glucose-1-phosphate adenylyltransferase large subunit 1,
           chloroplast precursor (ADP-glucose synthase)
           (ADP-glucose pyrophosphorylase) (AGPASE S)
           (Alpha-D-glucose-1-phosphate adenyl transferase)
           (Shrunken-2)
          Length = 516

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +2

Query: 242 RTYDIKSANFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGI 373
           R  DI  +N  N  + ++F  ++FNS+  ++   ++RT+LEGGI
Sbjct: 116 RLIDIPMSNCFNSGINKIFVMSQFNST--SLNRHIHRTYLEGGI 157

>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A (Rab escort
           protein homolog) (REP)
          Length = 511

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
 Frame = +2

Query: 92  YEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELL------ETLFHSITPNDPFLRTYD 253
           YE     +++  R I G ++PD  FL    DPEE++        L     P D   + +D
Sbjct: 440 YELDYDAAIANARDIFGKMFPDADFLPRAPDPEEIVVDGEDPSALNEHTLPEDLRAQLHD 499

Query: 254 IKSA 265
           ++ A
Sbjct: 500 MQQA 503

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,175,398
Number of Sequences: 369166
Number of extensions: 1253374
Number of successful extensions: 2924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2922
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00546

  1. Dr_sW_014_C04
  2. Dr_sW_020_I13