Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C04
(484 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NQC7|CYLD_HUMAN Probable ubiquitin carboxyl-terminal h... 69 4e-12
sp|Q80TQ2|CYLD_MOUSE Probable ubiquitin carboxyl-terminal h... 67 2e-11
sp|P55241|GLGL1_MAIZE Glucose-1-phosphate adenylyltransfera... 32 0.77
sp|Q58554|YB54_METJA Hypothetical protein MJ1154 31 1.3
sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferas... 30 2.2
sp|P57504|MUTS_BUCAI DNA mismatch repair protein mutS 29 5.0
sp|P30284|CG21_EMENI G2/mitotic-specific cyclin-B 29 6.5
sp|P32767|PDR6_YEAST Pleiotropic drug resistance regulatory... 28 8.5
sp|P31231|CASQ1_RANES Calsequestrin-1 precursor (Calsequest... 28 8.5
sp|Q9Y227|ENP4_HUMAN Ectonucleoside triphosphate diphosphoh... 28 8.5
>sp|Q9NQC7|CYLD_HUMAN Probable ubiquitin carboxyl-terminal hydrolase CYLD (Ubiquitin
thiolesterase CYLD) (Ubiquitin specific-processing
protease CYLD) (Deubiquitinating enzyme CYLD)
Length = 956
Score = 69.3 bits (168), Expect = 4e-12
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Frame = +2
Query: 44 EIVNILRSKIIFPLRKYEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELLETLFHSIT 223
E +LR++I+ PLR Y YV + + R+IL + F EKDPEE L LFH I
Sbjct: 635 ETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHIL 694
Query: 224 PNDPFLRTYDIKSA--NFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDE 385
+P L+ I+SA Q+C+ Q+F VPTI+++L +F+ + E
Sbjct: 695 RVEPLLK---IRSAGQKVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAE 747
>sp|Q80TQ2|CYLD_MOUSE Probable ubiquitin carboxyl-terminal hydrolase CYLD (Ubiquitin
thiolesterase CYLD) (Ubiquitin specific-processing
protease CYLD) (Deubiquitinating enzyme CYLD)
Length = 952
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Frame = +2
Query: 44 EIVNILRSKIIFPLRKYEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELLETLFHSIT 223
E +LR++I+ PLR Y YV + + R+IL + F EKDPEE L LFH I
Sbjct: 631 ETQELLRTEIVNPLRIYGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHDIL 690
Query: 224 PNDPFLRTYDIKSA--NFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDE 385
+P L+ I+SA Q+C Q+F VPTI+++L +F+ + E
Sbjct: 691 RVEPLLK---IRSAGQKVQDCNFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAE 743
>sp|P55241|GLGL1_MAIZE Glucose-1-phosphate adenylyltransferase large subunit 1,
chloroplast precursor (ADP-glucose synthase)
(ADP-glucose pyrophosphorylase) (AGPASE S)
(Alpha-D-glucose-1-phosphate adenyl transferase)
(Shrunken-2)
Length = 516
Score = 32.0 bits (71), Expect = 0.77
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 242 RTYDIKSANFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGI 373
R DI +N N + ++F ++FNS+ ++ ++RT+LEGGI
Sbjct: 116 RLIDIPMSNCFNSGINKIFVMSQFNST--SLNRHIHRTYLEGGI 157
>sp|Q58554|YB54_METJA Hypothetical protein MJ1154
Length = 451
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +2
Query: 119 SEFRQILGTLYPDKKFLHSEKDPEEL--LETLFHSITPNDPFLRTYDIKSANFQNCFMTQ 292
+ F LGT++ K EL + L H I + PF T +I + + +
Sbjct: 49 TRFEHSLGTMFIASKIAEKINADVELTRVSALLHDIG-HPPFSHTLEICGYSHEVFGRKK 107
Query: 293 LFYTNKFNSSVPTIKEMLNRTFLEGGILIDEVD 391
+ + N N S I + LNR LEG I+ +VD
Sbjct: 108 IKHMNLDNFSKSEIIKTLNRKNLEGKIISGDVD 140
>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A (Rab escort
protein homolog) (REP)
Length = 511
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +2
Query: 92 YEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELL------ETLFHSITPNDPFLRTYD 253
YE +++ R I G ++PD FL DPEE++ L P D + +D
Sbjct: 440 YELDYDAAIANARDIFGKMFPDADFLPRAPDPEEIVVDGEDPSALNEHTLPEDLRAQLHD 499
Query: 254 IKSA 265
++ A
Sbjct: 500 MQQA 503
>sp|P57504|MUTS_BUCAI DNA mismatch repair protein mutS
Length = 802
Score = 29.3 bits (64), Expect = 5.0
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Frame = +2
Query: 86 RKYEYVSFKSVSEFRQILGT-LYPDKKFLHSEKDPEELLETLFHSITPNDPFLRTYDIKS 262
+K SFK +F +I+G + K+ H +++TL ++ + P L+ Y+ K
Sbjct: 459 KKLMIESFKI--KFNKIIGYYIQISKRHTHLIPKYYVIIQTLKNTERYSVPLLKEYEEKV 516
Query: 263 AN--FQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDEVDLLVNM 406
N ++ + + Y FN P ++++ N + + E+D+LVN+
Sbjct: 517 LNSEMRSLLLEKKLYAEIFNIIEPFLEKLQN-----SALALSELDVLVNL 561
>sp|P30284|CG21_EMENI G2/mitotic-specific cyclin-B
Length = 478
Score = 28.9 bits (63), Expect = 6.5
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 28/156 (17%)
Frame = +2
Query: 35 INQEIVNILRSKII-----FPLRKYEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELL 199
++ E+V + R +++ F KYE V V+ F + + DK+ L +E+ +L
Sbjct: 273 LSAEVVALDRLQLVGVAAMFIASKYEEVLSPHVANFSHVADETFSDKEILDAER---HIL 329
Query: 200 ETLFHSITPNDP--FLR------TYDIKSANFQNCFMTQLFYTNKF----NSSVPTIKEM 343
TL ++++ +P FLR YDI++ M ++F S +
Sbjct: 330 ATLEYNMSYPNPMNFLRRISKADNYDIQTRTLGKYLMEISLLDHRFLGYPQSQIGAAAMY 389
Query: 344 LNRTFLE-----------GGILIDEVDLLVNMLIHY 418
L R L+ G +E+D + +++ Y
Sbjct: 390 LARLILDRGPWDATLAHYAGYTEEEIDEVFRLMVDY 425
>sp|P32767|PDR6_YEAST Pleiotropic drug resistance regulatory protein 6
Length = 1081
Score = 28.5 bits (62), Expect = 8.5
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +2
Query: 125 FRQILGTLYPDKKFLHSEKDPEELLETLFHSITPNDPFLRTYDIK 259
F+ ++ +Y + ++ E++L T+F ++ NDP L +YD++
Sbjct: 276 FQNLIDLMYQSTEGSDGYENAEKIL-TIFGNVFANDPLLMSYDLR 319
>sp|P31231|CASQ1_RANES Calsequestrin-1 precursor (Calsequestrin, skeletal muscle isoform)
Length = 420
Score = 28.5 bits (62), Expect = 8.5
Identities = 20/109 (18%), Positives = 45/109 (41%)
Frame = +2
Query: 23 STQNINQEIVNILRSKIIFPLRKYEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELLE 202
S + + ++++L + F +E +F+++ + +++G F + + + + E
Sbjct: 133 SADTLVEFLLDVLEDPVEFIDGSHELAAFENLDDEPKLIGY------FKNEDSEHYKAYE 186
Query: 203 TLFHSITPNDPFLRTYDIKSANFQNCFMTQLFYTNKFNSSVPTIKEMLN 349
P PF T+D K A + ++ Y F+ TI N
Sbjct: 187 DAAEEFHPYIPFFATFDAKVAKTLTLKLNEIDYYEPFHDEPITIPSKPN 235
>sp|Q9Y227|ENP4_HUMAN Ectonucleoside triphosphate diphosphohydrolase 4 (NTPDase4)
(Uridine-diphosphatase) (UDPase) (Lysosomal apyrase-like
protein of 70 kDa)
Length = 616
Score = 28.5 bits (62), Expect = 8.5
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Frame = +2
Query: 218 ITPNDPFLRT---YDIKSANFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDEV 388
+TP+ P+L DIK QN L T F+ TI+ +N+T +E
Sbjct: 358 LTPDMPYLDPCLPLDIKDEIQQNGQTIYLRGTGDFDLCRETIQPFMNKT--------NET 409
Query: 389 DLLVNML----IHYQSKMISNLVSLFVCKIEILRLG 484
+N + IH+Q+ + C ++LR+G
Sbjct: 410 QTSLNGVYQPPIHFQNSEFYGFSEFYYCTEDVLRMG 445
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,739,959
Number of Sequences: 369166
Number of extensions: 934497
Number of successful extensions: 2349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2347
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)