Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_I13
(599 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NQC7|CYLD_HUMAN Probable ubiquitin carboxyl-terminal h... 57 4e-08
sp|Q80TQ2|CYLD_MOUSE Probable ubiquitin carboxyl-terminal h... 55 1e-07
sp|P55241|GLGL1_MAIZE Glucose-1-phosphate adenylyltransfera... 32 1.2
sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferas... 30 3.6
sp|Q8KA15|PRIA_BUCAP Primosomal protein N' (ATP-dependent h... 29 7.9
sp|O51264|PEPF_BORBU Oligoendopeptidase F homolog 29 7.9
>sp|Q9NQC7|CYLD_HUMAN Probable ubiquitin carboxyl-terminal hydrolase CYLD (Ubiquitin
thiolesterase CYLD) (Ubiquitin specific-processing
protease CYLD) (Deubiquitinating enzyme CYLD)
Length = 956
Score = 57.0 bits (136), Expect = 4e-08
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = +2
Query: 2 YEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELLETLFHSITPNDPFLRTYDIKSA-- 175
Y YV + + R+IL + F EKDPEE L LFH I +P L+ I+SA
Sbjct: 651 YGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLK---IRSAGQ 707
Query: 176 NFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDE 295
Q+C+ Q+F VPTI+++L +F+ + E
Sbjct: 708 KVQDCYFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAE 747
>sp|Q80TQ2|CYLD_MOUSE Probable ubiquitin carboxyl-terminal hydrolase CYLD (Ubiquitin
thiolesterase CYLD) (Ubiquitin specific-processing
protease CYLD) (Deubiquitinating enzyme CYLD)
Length = 952
Score = 55.1 bits (131), Expect = 1e-07
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 2 YEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELLETLFHSITPNDPFLRTYDIKSA-- 175
Y YV + + R+IL + F EKDPEE L LFH I +P L+ I+SA
Sbjct: 647 YGYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHDILRVEPLLK---IRSAGQ 703
Query: 176 NFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGILIDE 295
Q+C Q+F VPTI+++L +F+ + E
Sbjct: 704 KVQDCNFYQIFMEKNEKVGVPTIQQLLEWSFINSNLKFAE 743
>sp|P55241|GLGL1_MAIZE Glucose-1-phosphate adenylyltransferase large subunit 1,
chloroplast precursor (ADP-glucose synthase)
(ADP-glucose pyrophosphorylase) (AGPASE S)
(Alpha-D-glucose-1-phosphate adenyl transferase)
(Shrunken-2)
Length = 516
Score = 32.0 bits (71), Expect = 1.2
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 152 RTYDIKSANFQNCFMTQLFYTNKFNSSVPTIKEMLNRTFLEGGI 283
R DI +N N + ++F ++FNS+ ++ ++RT+LEGGI
Sbjct: 116 RLIDIPMSNCFNSGINKIFVMSQFNST--SLNRHIHRTYLEGGI 157
>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A (Rab escort
protein homolog) (REP)
Length = 511
Score = 30.4 bits (67), Expect = 3.6
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +2
Query: 2 YEYVSFKSVSEFRQILGTLYPDKKFLHSEKDPEELL------ETLFHSITPNDPFLRTYD 163
YE +++ R I G ++PD FL DPEE++ L P D + +D
Sbjct: 440 YELDYDAAIANARDIFGKMFPDADFLPRAPDPEEIVVDGEDPSALNEHTLPEDLRAQLHD 499
Query: 164 IKSA 175
++ A
Sbjct: 500 MQQA 503
>sp|Q8KA15|PRIA_BUCAP Primosomal protein N' (ATP-dependent helicase priA) (Replication
factor Y)
Length = 720
Score = 29.3 bits (64), Expect = 7.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = +3
Query: 189 VS*HSYFTQINLI------HLFQQLKKCSIEHFWKVVF**MRIDNENNIVVK 326
+S H YF + I H F CSIEHF + F + + EN ++K
Sbjct: 531 ISQHYYFPYVRFIALTNVDHYFFSFHFCSIEHFLQFYFNLINLTGENKKLLK 582
>sp|O51264|PEPF_BORBU Oligoendopeptidase F homolog
Length = 590
Score = 29.3 bits (64), Expect = 7.9
Identities = 26/95 (27%), Positives = 38/95 (40%)
Frame = +2
Query: 71 KFLHSEKDPEELLETLFHSITPNDPFLRTYDIKSANFQNCFMTQLFYTNKFNSSVPTIKE 250
+F K+ E L L S + F+ K+ FQN F QLF N + E
Sbjct: 209 RFYQKYKNNENTLANLIISDFKKNHFIA----KTRRFQNTFSMQLFSNNIDKKVYTNLIE 264
Query: 251 MLNRTFLEGGILIDEN**RKQYCCEKYFLKYNFYV 355
+N +L D RK+ ++Y Y+ YV
Sbjct: 265 TVNENL---PVLNDYYEFRKKVLNQEYLYHYDVYV 296
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,302,036
Number of Sequences: 369166
Number of extensions: 1084760
Number of successful extensions: 2484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2482
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)