DrC_00542
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00542 (666 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2 >gi|5278353... 130 3e-30 sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686... 126 6e-29 sp|P40962|RTS2_YEAST Zinc finger protein RTS2 34 0.39 sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding pr... 33 0.67 sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding pr... 33 0.67 sp|Q9H6B1|ZN659_HUMAN Zinc finger protein 659 32 1.5 sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 32 1.5 sp|Q6AXX3|ZN659_RAT Zinc finger protein 659 32 1.5 sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 32 2.0 sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 32 2.0
>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2 sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin type 2 Length = 199 Score = 130 bits (327), Expect = 3e-30 Identities = 60/100 (60%), Positives = 77/100 (77%) Frame = +2 Query: 170 IKRDFLKPRDFAVYLEANLNKSQVISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKK 349 +KR+ L+ RD+ V LE+ L K+ VI+K+ P ++ GYYC VCDCVVKDSINFLDHINGKK Sbjct: 44 VKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKK 103 Query: 350 HQRNQGMSMRIKRSSVDDVKNRFEFIKQKREEALKEISLD 469 HQRN GMSMR++RS++D VK RFE K+K EE K+ + Sbjct: 104 HQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEKQKDYDFE 143
>sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686.4 in chromosome III Length = 407 Score = 126 bits (316), Expect = 6e-29 Identities = 59/121 (48%), Positives = 88/121 (72%), Gaps = 1/121 (0%) Frame = +2 Query: 110 LVIAKDLEHLKKIRKLNDD-EIKRDFLKPRDFAVYLEANLNKSQVISKSAPGNQQAGYYC 286 L+ K+ E ++ +K D+ ++KR+ L+ R++ V L++ + KS VI+K+ P + G+YC Sbjct: 223 LLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGKSVVITKATPSAETGGFYC 282 Query: 287 EVCDCVVKDSINFLDHINGKKHQRNQGMSMRIKRSSVDDVKNRFEFIKQKREEALKEISL 466 +VCDCVVKDSINFLDHINGK HQRN GMSM+ K+S+V DV+ RF+ +K K+E KE + Sbjct: 283 DVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRERFKLMKDKKEREKKEAQV 342 Query: 467 D 469 + Sbjct: 343 E 343
>sp|P40962|RTS2_YEAST Zinc finger protein RTS2 Length = 232 Score = 33.9 bits (76), Expect = 0.39 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = +2 Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQR--NQGMSMRIKRSSVDDVKNRFEFIKQ 433 G Q+ YYC++C KD+ F H H R +Q + +R ++ K + +KQ Sbjct: 18 GLQKTRYYCQICQRQCKDANGFQSHNKSPSHLRKISQVTAEDARRYNIQFEKGFLQLLKQ 77 Query: 434 KREE 445 + E Sbjct: 78 RHGE 81
>sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1) Length = 3703 Score = 33.1 bits (74), Expect = 0.67 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 278 YYCEVCDCVVKDSINFLDHINGKKHQRNQGM 370 Y+C +C+ K +N + H+ KHQR++ + Sbjct: 1088 YHCVLCNYSTKAKLNLIQHVRSMKHQRSESL 1118
>sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1) Length = 3726 Score = 33.1 bits (74), Expect = 0.67 Identities = 10/31 (32%), Positives = 19/31 (61%) Frame = +2 Query: 278 YYCEVCDCVVKDSINFLDHINGKKHQRNQGM 370 Y+C +C+ K +N + H+ KHQR++ + Sbjct: 1089 YHCVLCNYSTKAKLNLIQHVRSMKHQRSESL 1119
>sp|Q9H6B1|ZN659_HUMAN Zinc finger protein 659 Length = 395 Score = 32.0 bits (71), Expect = 1.5 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 242 ISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 355 ++K G Q ++CE+CD V HI+ ++H+ Sbjct: 255 VNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHK 292
>sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 Length = 471 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +2 Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ-RNQGMSMRIKRS 391 G Q ++CE+CD V I HI+ ++H+ R G ++ K S Sbjct: 342 GLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYS 386
>sp|Q6AXX3|ZN659_RAT Zinc finger protein 659 Length = 395 Score = 32.0 bits (71), Expect = 1.5 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 242 ISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 355 ++K G Q ++CE+CD V HI+ ++H+ Sbjct: 255 VNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHK 292
>sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 Length = 482 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +2 Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ-RNQGMSMRIKRS 391 G Q ++CE+CD V I HI+ ++H+ R G ++ K S Sbjct: 354 GLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYS 398
>sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 Length = 492 Score = 31.6 bits (70), Expect = 2.0 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +2 Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 355 G Q ++CE+CD V I HI+ ++H+ Sbjct: 365 GLQNKTFHCEICDVHVNSEIQLKQHISSRRHK 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,544,315
Number of Sequences: 369166
Number of extensions: 729530
Number of successful extensions: 2361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
