Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_A07
(666 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2 >gi|5278353... 130 3e-30
sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686... 126 6e-29
sp|P40962|RTS2_YEAST Zinc finger protein RTS2 34 0.39
sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding pr... 33 0.67
sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding pr... 33 0.67
sp|Q9H6B1|ZN659_HUMAN Zinc finger protein 659 32 1.5
sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 32 1.5
sp|Q6AXX3|ZN659_RAT Zinc finger protein 659 32 1.5
sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 32 2.0
sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 32 2.0
>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2
sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin type 2
Length = 199
Score = 130 bits (327), Expect = 3e-30
Identities = 60/100 (60%), Positives = 77/100 (77%)
Frame = +2
Query: 170 IKRDFLKPRDFAVYLEANLNKSQVISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKK 349
+KR+ L+ RD+ V LE+ L K+ VI+K+ P ++ GYYC VCDCVVKDSINFLDHINGKK
Sbjct: 44 VKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKK 103
Query: 350 HQRNQGMSMRIKRSSVDDVKNRFEFIKQKREEALKEISLD 469
HQRN GMSMR++RS++D VK RFE K+K EE K+ +
Sbjct: 104 HQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEKQKDYDFE 143
>sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686.4 in chromosome III
Length = 407
Score = 126 bits (316), Expect = 6e-29
Identities = 59/121 (48%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Frame = +2
Query: 110 LVIAKDLEHLKKIRKLNDD-EIKRDFLKPRDFAVYLEANLNKSQVISKSAPGNQQAGYYC 286
L+ K+ E ++ +K D+ ++KR+ L+ R++ V L++ + KS VI+K+ P + G+YC
Sbjct: 223 LLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGKSVVITKATPSAETGGFYC 282
Query: 287 EVCDCVVKDSINFLDHINGKKHQRNQGMSMRIKRSSVDDVKNRFEFIKQKREEALKEISL 466
+VCDCVVKDSINFLDHINGK HQRN GMSM+ K+S+V DV+ RF+ +K K+E KE +
Sbjct: 283 DVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRERFKLMKDKKEREKKEAQV 342
Query: 467 D 469
+
Sbjct: 343 E 343
>sp|P40962|RTS2_YEAST Zinc finger protein RTS2
Length = 232
Score = 33.9 bits (76), Expect = 0.39
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQR--NQGMSMRIKRSSVDDVKNRFEFIKQ 433
G Q+ YYC++C KD+ F H H R +Q + +R ++ K + +KQ
Sbjct: 18 GLQKTRYYCQICQRQCKDANGFQSHNKSPSHLRKISQVTAEDARRYNIQFEKGFLQLLKQ 77
Query: 434 KREE 445
+ E
Sbjct: 78 RHGE 81
>sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3703
Score = 33.1 bits (74), Expect = 0.67
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 278 YYCEVCDCVVKDSINFLDHINGKKHQRNQGM 370
Y+C +C+ K +N + H+ KHQR++ +
Sbjct: 1088 YHCVLCNYSTKAKLNLIQHVRSMKHQRSESL 1118
>sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3726
Score = 33.1 bits (74), Expect = 0.67
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 278 YYCEVCDCVVKDSINFLDHINGKKHQRNQGM 370
Y+C +C+ K +N + H+ KHQR++ +
Sbjct: 1089 YHCVLCNYSTKAKLNLIQHVRSMKHQRSESL 1119
>sp|Q9H6B1|ZN659_HUMAN Zinc finger protein 659
Length = 395
Score = 32.0 bits (71), Expect = 1.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 242 ISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 355
++K G Q ++CE+CD V HI+ ++H+
Sbjct: 255 VNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHK 292
>sp|Q569K4|ZN533_HUMAN Zinc finger protein 533
Length = 471
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ-RNQGMSMRIKRS 391
G Q ++CE+CD V I HI+ ++H+ R G ++ K S
Sbjct: 342 GLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYS 386
>sp|Q6AXX3|ZN659_RAT Zinc finger protein 659
Length = 395
Score = 32.0 bits (71), Expect = 1.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 242 ISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 355
++K G Q ++CE+CD V HI+ ++H+
Sbjct: 255 VNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHK 292
>sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533
Length = 482
Score = 31.6 bits (70), Expect = 2.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ-RNQGMSMRIKRS 391
G Q ++CE+CD V I HI+ ++H+ R G ++ K S
Sbjct: 354 GLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYS 398
>sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533
Length = 492
Score = 31.6 bits (70), Expect = 2.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 260 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 355
G Q ++CE+CD V I HI+ ++H+
Sbjct: 365 GLQNKTFHCEICDVHVNSEIQLKQHISSRRHK 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,544,315
Number of Sequences: 369166
Number of extensions: 729530
Number of successful extensions: 2361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)